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contig_metadata

17 rows where bioproject = "PRJNA929922" and tax_kingdom = "Pararnavirae"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 17 ✖

bioproject 1

  • PRJNA929922 · 17 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3457146 3457146 PRJNA929922_P_NODE_142863_length_245_cov_0.744186_g142323_i0 PRJNA929922 142863 245 0.744186 1.8232557 Lentivirus humimdef1 3418650 Viruses Viruses 54.7 0.006   NTclustered gi|572435334|gb|KF373848.1| 11676 g142323 i0 96.97 0.13469387755102 33 0 13 1 7 39 715 684 HIV-1 isolate BW_TH892340 from Botswana envelope glycoprotein (env) gene, partial cds blastn 33 54.7 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
3458515 3458515 PRJNA929922_P_NODE_85903_length_272_cov_1.376884_g85363_i0 PRJNA929922 85903 272 1.376884 3.74512448 Gammaretrovirus murleu 3428959 Viruses Viruses 455 1.6300000000000002e-123   NTclustered gi|1167936530|gb|KY574504.1| 11786 g85363 i0 97.037 99.2867647058823 270 8 99 0 3 272 2193 1924 Murine leukemia virus isolate AKR13, complete genome blastn 27006 455 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
7632079 7632079 PRJNA929922_S_NODE_30706_length_312_cov_2.995816_g30482_i0 PRJNA929922 30706 312 2.995816 9.34694592 root 1 Root_unresolved Root_unresolved 571 1.81e-158   NTclustered gi|1173658|gb|U36602.1|MLU36602 11786 g30482 i0 99.679 9 312 1 100 0 1 312 674 985 Murine leukemia virus gPr80 envelope polyprotein precursor (env) mRNA, complete cds blastn 2808 571 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
9833785 9833785 PRJNA929922_P_NODE_124788_length_248_cov_0.880000_g124248_i0 PRJNA929922 124788 248 0.88 2.1824 Lentivirus simimdef 3418654 Viruses Viruses 52.8 0.022   NTclustered gi|87083820|gb|DQ373064.1| 11723 g124248 i0 100 0.112903225806452 28 0 11 0 55 82 4931 4904 Simian immunodeficiency virus isolate SIVcpzLB7, complete genome blastn 28 52.8 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus simimdef
12733443 12733443 PRJNA929922_S_NODE_50_length_2447_cov_66.820135_g16_i0 PRJNA929922 50 2447 66.820135 1635.08870345 Moloney murine leukemia virus 11801 Viruses Viruses 1295 0   NR NP_057933.2 11801 g16 i0 97.6 2.42378422558235 659 16 80.8 0 2305 329 677 1335 NP_057933.2 Pr180 [Moloney murine leukemia virus] diamond 5931 1295 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
14935568 14935568 PRJNA929922_P_NODE_87612_length_270_cov_1.426396_g87072_i0 PRJNA929922 87612 270 1.426396 3.8512692 Spiretrovirus fruitfly7011 3117318 Viruses Viruses 468 2.07e-127   NTclustered gi|2710388881|tpg|BK066308.1| 3117318 g87072 i0 98.134 27.0740740740741 268 5 99 0 3 270 6795 6528 MAG TPA_asm: Spiretrovirus fruitfly7011 isolate Spiretro7011 genomic sequence blastn 7310 468 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales     Spiretrovirus fruitfly7011
14936131 14936131 PRJNA929922_S_NODE_32_length_3893_cov_50.400000_g1_i15 PRJNA929922 32 3893 50.4 1962.072 Gammaretrovirus murleu 3428959 Viruses Viruses 6425 0   NTclustered gi|1167936530|gb|KY574504.1| 11786 g1 i15 97.018 98.8140251733881 3823 111 100 3 1 3822 514 4334 Murine leukemia virus isolate AKR13, complete genome blastn 384683 6425 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
18759832 18759832 PRJNA929922_S_NODE_375_length_1168_cov_11.487671_g1_i17 PRJNA929922 375 1168 11.487671 134.17599728 Gammaretrovirus murleu 3428959 Viruses Viruses 1982 0   NTclustered gi|1167936572|gb|KY574505.1| 11786 g1 i17 99.271 96.5308219178082 1097 8 100 0 1 1097 3238 4334 Murine leukemia virus isolate AKR-L3, complete genome blastn 112748 1982 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
19105349 19105349 PRJNA929922_S_NODE_12735_length_400_cov_2.321101_g12511_i0 PRJNA929922 12735 400 2.321101 9.284404 root 1 Root_unresolved Root_unresolved 728 0   NTclustered gi|1045515|gb|U36800.1|MLU36800 11786 g12511 i0 99.501 11.03 401 1 100 1 1 400 2001 1601 Murine leukemia virus Mo Ampho Delta recombinant envelope polyprotein (env) mRNA, complete cds blastn 4412 728 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
21310329 21310329 PRJNA929922_S_NODE_33757_length_304_cov_2.406926_g33533_i0 PRJNA929922 33757 304 2.406926 7.31705504 Gammaretrovirus gibleu 3428953 Viruses Viruses 562 1.06e-155   NTclustered gi|971888245|gb|KT724047.1| 11840 g33533 i0 100 56.1809210526316 304 0 100 0 1 304 609 912 Gibbon ape leukemia virus strain San Francisco, complete genome blastn 17079 562 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus gibleu
27000144 27000144 PRJNA929922_P_NODE_70982_length_290_cov_1.202765_g70442_i0 PRJNA929922 70982 290 1.202765 3.4880185 root 1 Root_unresolved Root_unresolved 43.1 0.0422   NR AKN05841.1 11676 g70442 i0 44.7 1.42758620689655 38 20 39.3 1 148 35 158 194 AKN05841.1 gag protein, partial [Human immunodeficiency virus 1] diamond 414 43.5 0.990804597701149 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
27783238 27783238 PRJNA929922_P_NODE_165944_length_231_cov_2.886076_g165404_i0 PRJNA929922 165944 231 2.886076 6.66683556 Moloney murine leukemia virus 11801 Viruses Viruses 123 1.6e-30   NR NP_057933.2 11801 g165404 i0 100 0.805194805194805 62 0 80.5 0 230 45 1274 1335 NP_057933.2 Pr180 [Moloney murine leukemia virus] diamond 186 123 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
30158144 30158144 PRJNA929922_P_NODE_33512_length_363_cov_2.800000_g32972_i0 PRJNA929922 33512 363 2.8 10.164 Gammaretrovirus 153135 Viruses Viruses 251 9.77e-75   NR ARB03489.1 11786 g32972 i0 97.5 10.9090909090909 120 3 99.2 0 361 2 781 900 ARB03489.1 putative gag-pro-pol polyprotein [Murine leukemia virus] diamond 3960 253 0.992094861660079 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
30316882 30316882 PRJNA929922_P_NODE_36572_length_354_cov_2.295374_g36032_i0 PRJNA929922 36572 354 2.295374 8.12562396 Gammaretrovirus 153135 Viruses Viruses 220 8.720000000000001e-64   NR NP_040333.1 11795 g36032 i0 94.6 4.74576271186441 112 6 94.9 0 354 19 529 640 NP_040333.1 RNA-dependent DNA polymerase, partial [Friend murine leukemia virus] diamond 1680 222 0.990990990990991 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
31130465 31130465 PRJNA929922_P_NODE_28635_length_380_cov_2.973941_g28095_i0 PRJNA929922 28635 380 2.973941 11.3009758 Gammaretrovirus murleu 3428959 Viruses Viruses 258 1.1e-81   NR 8WUS_E 11801 g28095 i0 99.2 3.97894736842105 126 1 99.5 0 379 2 251 376 8WUS_E Chain E, Gag-Pol polyprotein [Moloney murine leukemia virus] diamond 1512 258 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
31232445 31232445 PRJNA929922_P_NODE_122455_length_248_cov_0.880000_g121915_i0 PRJNA929922 122455 248 0.88 2.1824 root 1 Root_unresolved Root_unresolved 49.7 1.41e-4   NR NP_612577.1 10640 g121915 i0 43.5 2.17741935483871 46 26 55.6 0 11 148 585 630 NP_612577.1 Enzymatic polyprotein [Contains: Aspartic protease; Endonuclease; Reverse transcriptase] [Carnation etched ring virus] diamond 540 49.7 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Caulimovirus Caulimovirus incidianthi
31257164 31257164 PRJNA929922_P_NODE_149095_length_243_cov_1.311765_g148555_i0 PRJNA929922 149095 243 1.311765 3.18758895 Dioscorea nummularia-associated virus 2303485 Viruses Viruses 102 2.85e-23   NR YP_009553219.1 2303485 g148555 i0 66.7 0.962962962962963 78 25 95.1 1 243 13 1336 1413 YP_009553219.1 ORF3 [Dioscorea nummularia-associated virus] diamond 234 102 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Dioscovirus Dioscovirus dioscoreae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;