RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA929922", tax_clade = "ant, tsetse, mealybug, aphid, etc. endosymbionts" and tax_phylum = "Pseudomonadota"

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tax_superkingdom 1

tax_phylum 1

  • Pseudomonadota · 3 ✖

tax_kingdom 1

tax_clade 1

  • ant, tsetse, mealybug, aphid, etc. endosymbionts · 3 ✖

bioproject 1

  • PRJNA929922 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3457199 3457199 PRJNA929922_P_NODE_145363_length_244_cov_0.900585_g144823_i0 PRJNA929922 145363 244 0.900585 2.1974274 Symbiopectobacterium purcellii 2871826 Bacteria Bacteria 342 1.17e-89   NTclustered gi|2087438146|gb|CP081864.1| 2871826 g144823 i0 92.469 21.3729508196721 239 18 98 0 1 239 2584837 2584599 Symbiopectobacterium purcellii strain SyEd1 chromosome, complete genome blastn 5215 342 1 Bacteria ant, tsetse, mealybug, aphid, etc. endosymbionts Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Symbiopectobacterium Symbiopectobacterium purcellii
12387324 12387324 PRJNA929922_S_NODE_32730_length_307_cov_1.645299_g32506_i0 PRJNA929922 32730 307 1.645299 5.05106793 Candidatus Stammera capleta 2608262 Bacteria Bacteria 52.8 0.029   NTclustered gi|2676815323|gb|CP144799.1| 2608262 g32506 i0 100 0.182410423452769 28 0 9 0 27 54 146794 146767 MAG: Candidatus Stammera capleta isolate KBEPEHBJ chromosome blastn 56 52.8 1 Bacteria ant, tsetse, mealybug, aphid, etc. endosymbionts Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Candidatus Stammera Candidatus Stammera capleta
14007733 14007733 PRJNA929922_P_NODE_51811_length_320_cov_1.870445_g51271_i0 PRJNA929922 51811 320 1.870445 5.985424 Candidatus Williamhamiltonella 568987 Bacteria Bacteria 579 1.1099999999999996e-160   NTclustered gi|1277649272|gb|CP017605.1| 138072 g51271 i0 100 10.759375 313 0 98 0 1 313 2095981 2096293 Candidatus Hamiltonella defensa strain NY26 chromosome blastn 3443 579 1 Bacteria ant, tsetse, mealybug, aphid, etc. endosymbionts Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Candidatus Williamhamiltonella Candidatus Williamhamiltonella defendens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;