RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA929922", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 6 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 6 ✖

bioproject 1

  • PRJNA929922 · 6 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27877773 27877773 PRJNA929922_P_NODE_111485_length_250_cov_0.870056_g110945_i0 PRJNA929922 111485 250 0.870056 2.17514 Chlamydiales bacterium 2047757 Bacteria Bacteria 130 3.78e-33   NR MBN9379105.1 2047757 g110945 i0 70.7 0.984 82 24 98.4 0 5 250 147 228 MBN9379105.1 GreA/GreB family elongation factor [Chlamydiales bacterium] diamond 246 130 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
28509302 28509302 PRJNA929922_P_NODE_141387_length_245_cov_0.895349_g140847_i0 PRJNA929922 141387 245 0.895349 2.19360505 Chlamydiales bacterium STE3 1910938 Bacteria Bacteria 155 8.569999999999996e-42   NR KAF3362093.1 1910938 g140847 i0 93.8 2.97551020408163 81 5 99.2 0 245 3 350 430 KAF3362093.1 Aconitate hydratase, mitochondrial [Chlamydiales bacterium STE3] diamond 729 155 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium STE3
31067749 31067749 PRJNA929922_P_NODE_151895_length_243_cov_0.905882_g151355_i0 PRJNA929922 151895 243 0.905882 2.20129326 Candidatus Protochlamydia sp. 2687294 Bacteria Bacteria 154 1.6899999999999996e-41   NR MBA2369045.1 2687294 g151355 i0 93.8 7.97530864197531 81 5 100 0 243 1 709 789 MBA2369045.1 transcription-repair coupling factor [Candidatus Protochlamydia sp.] diamond 1938 154 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia sp.
32238127 32238127 PRJNA929922_P_NODE_120258_length_249_cov_0.875000_g119718_i0 PRJNA929922 120258 249 0.875 2.17875 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 161 7.85e-44   NR WP_079992924.1 389348 g119718 i0 95.1 0.987951807228916 82 4 98.8 0 2 247 126 207 WP_079992924.1 sensor histidine kinase [Candidatus Protochlamydia naegleriophila] diamond 246 161 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
32269688 32269688 PRJNA929922_P_NODE_96278_length_261_cov_1.090426_g95738_i0 PRJNA929922 96278 261 1.090426 2.84601186 Chlamydiota bacterium 2081524 Bacteria Bacteria 42.7 0.0468   NR MCX6986823.1 2081524 g95738 i0 32.1 0.64367816091954 56 38 64.4 0 70 237 269 324 MCX6986823.1 4-alpha-glucanotransferase [Chlamydiota bacterium] diamond 168 42.7 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
32459459 32459459 PRJNA929922_P_NODE_152379_length_243_cov_0.905882_g151839_i0 PRJNA929922 152379 243 0.905882 2.20129326 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 130 2.11e-33   NR MBA3816824.1 2052176 g151839 i0 78.8 0.987654320987654 80 17 98.8 0 3 242 321 400 MBA3816824.1 single-stranded-DNA-specific exonuclease RecJ [Parachlamydiaceae bacterium] diamond 240 130 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;