RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where bioproject = "PRJNA929922" and tax_clade = "Methanomada group"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Methanomada group · 6 ✖

bioproject 1

  • PRJNA929922 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8559485 8559485 PRJNA929922_P_NODE_159847_length_241_cov_1.648810_g159307_i0 PRJNA929922 159847 241 1.64881 3.9736321 Methanobrevibacter sp. AbM4 224719 Archaea Archaea 52.8 0.022   NTclustered gi|509083678|gb|CP004050.1| 224719 g159307 i0 100 0.116182572614108 28 0 12 0 134 161 1082368 1082341 Methanobrevibacter sp. AbM4, complete genome blastn 28 52.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp. AbM4
14007518 14007518 PRJNA929922_P_NODE_127311_length_247_cov_1.298851_g126771_i0 PRJNA929922 127311 247 1.298851 3.20816197 Methanocaldococcus 196118 Archaea Archaea 145 3.58e-30   NTclustered gi|103488817|gb|DQ516870.1| 2190 g126771 i0 100 0.631578947368421 78 0 32 0 170 247 971 1048 Methanocaldococcus jannaschii spike-in control MJ-5000-154 genomic sequence blastn 156 145 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanocaldococcaceae Methanocaldococcus Methanocaldococcus jannaschii
27498984 27498984 PRJNA929922_P_NODE_115583_length_250_cov_0.870056_g115043_i0 PRJNA929922 115583 250 0.870056 2.17514 uncultured Methanobrevibacter sp. 253161 Archaea Archaea 85.9 2.65e-17   NR WP_296889016.1 253161 g115043 i0 49.4 0.972 81 40 97.2 1 245 3 1577 1656 WP_296889016.1 carboxypeptidase-like regulatory domain-containing protein [uncultured Methanobrevibacter sp.] diamond 243 85.9 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter uncultured Methanobrevibacter sp.
29614039 29614039 PRJNA929922_S_NODE_60890_length_251_cov_1.685393_g60666_i0 PRJNA929922 60890 251 1.685393 4.23033643 Methanobrevibacter sp. 66852 Archaea Archaea 119 2.38e-29   NR MDO5826752.1 66852 g60666 i0 95.6 0.812749003984064 68 3 81.3 0 2 205 412 479 MDO5826752.1 flippase [Methanobrevibacter sp.] diamond 204 119 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
31707078 31707078 PRJNA929922_P_NODE_163237_length_241_cov_0.916667_g162697_i0 PRJNA929922 163237 241 0.916667 2.20916747 Methanobrevibacter 2172 Archaea Archaea 112 3.73e-30   NR WP_409198532.1 2172 g162697 i0 92.3 6.47302904564315 52 4 64.7 0 2 157 53 104 WP_409198532.1 MULTISPECIES: translation initiation factor eIF-1A [Methanobrevibacter] diamond 1560 112 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter  
31984658 31984658 PRJNA929922_P_NODE_19018_length_429_cov_0.856742_g18483_i0 PRJNA929922 19018 429 0.856742 3.67542318 Methanobrevibacter arboriphilus 39441 Archaea Archaea 45.4 0.0279   NR WP_221061479.1 39441 g18483 i0 37 0.566433566433566 81 47 55.2 2 169 405 202 280 WP_221061479.1 DUF460 domain-containing protein [Methanobrevibacter arboriphilus] diamond 243 45.4 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter arboriphilus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;