RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA929522", tax_kingdom = "Thermotogati" and tax_superkingdom = "Bacteria"

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tax_phylum 2

tax_superkingdom 1

  • Bacteria · 2 ✖

tax_kingdom 1

  • Thermotogati · 2 ✖

bioproject 1

  • PRJNA929522 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16208283 16208283 PRJNA929522_S_NODE_4113_length_336_cov_1.460076_g4043_i0 PRJNA929522 4113 336 1.460076 4.90585536 Fretibacterium sp. 2699746 Bacteria Bacteria 107 1.1300000000000002e-27   NR MBQ9526391.1 2699746 g4043 i0 82 4.90178571428571 61 11 54.5 0 335 153 42 102 MBQ9526391.1 elongation factor Tu [Fretibacterium sp.] diamond 1647 107 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium sp.
27656918 27656918 PRJNA929522_S_NODE_4244_length_332_cov_1.486486_g4174_i0 PRJNA929522 4244 332 1.486486 4.93513352 Deinococcus cellulosilyticus 401558 Bacteria Bacteria 68.9 6.75e-11   NR WP_146882080.1 401558 g4174 i0 61.7 0.849397590361446 47 18 42.5 0 191 331 367 413 WP_146882080.1 glycosyl hydrolase family 18 protein [Deinococcus cellulosilyticus] diamond 282 68.9 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus cellulosilyticus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;