RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJNA929522", tax_kingdom = "Pseudomonadati" and tax_phylum = "Spirochaetota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 7 ✖

tax_kingdom 1

  • Pseudomonadati · 7 ✖

bioproject 1

  • PRJNA929522 · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4733792 4733792 PRJNA929522_S_NODE_624_length_791_cov_4.026462_g570_i0 PRJNA929522 624 791 4.026462 31.84931442 Spirochaetota bacterium 2202144 Bacteria Bacteria 143 4.58e-29   NTclustered gi|2649718696|emb|OZ001226.1| 2202144 g570 i0 81.461 30.8091024020228 178 30 22 3 84 259 74549 74373 MAG: Spirochaetota bacterium isolate 8b34eeeb-0c33-43c6-8155-d1d64b2f6b4c genome assembly, chromosome: 19 blastn 24370 143 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium
17483555 17483555 PRJNA929522_S_NODE_414_length_921_cov_8.425708_g371_i0 PRJNA929522 414 921 8.425708 77.60077068 Spirochaetota bacterium 2202144 Bacteria Bacteria 171 2.46e-37   NTclustered gi|2649718696|emb|OZ001226.1| 2202144 g371 i0 84.27 49.885993485342 178 25 19 3 154 329 74373 74549 MAG: Spirochaetota bacterium isolate 8b34eeeb-0c33-43c6-8155-d1d64b2f6b4c genome assembly, chromosome: 19 blastn 45945 171 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium
23857711 23857711 PRJNA929522_S_NODE_519_length_852_cov_3.191271_g371_i1 PRJNA929522 519 852 3.191271 27.18962892 Spirochaetota bacterium 2202144 Bacteria Bacteria 171 2.27e-37   NTclustered gi|2649718696|emb|OZ001226.1| 2202144 g371 i1 84.27 16.6713615023474 178 25 21 3 154 329 74373 74549 MAG: Spirochaetota bacterium isolate 8b34eeeb-0c33-43c6-8155-d1d64b2f6b4c genome assembly, chromosome: 19 blastn 14204 171 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium
27695709 27695709 PRJNA929522_S_NODE_9944_length_242_cov_0.911243_g9874_i0 PRJNA929522 9944 242 0.911243 2.20520806 Bacteria 2 Bacteria Bacteria 62.8 3.09e-9   NR MCB1174923.1 2026757 g9874 i0 35.4 2.9504132231405 79 51 97.9 0 5 241 68 146 MCB1174923.1 MFS transporter [Leptospiraceae bacterium] diamond 714 62.8 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae   Leptospiraceae bacterium
28042752 28042752 PRJNA929522_S_NODE_9405_length_245_cov_1.302326_g9335_i0 PRJNA929522 9405 245 1.302326 3.1906987 Cyanobacteriota/Melainabacteria group 1798711 Bacteria Bacteria 51.2 1.43e-5   NR MBP6740417.1 2026757 g9335 i0 34.6 3.99183673469388 81 51 99.2 2 244 2 41 119 MBP6740417.1 adenylate/guanylate cyclase domain-containing protein [Leptospiraceae bacterium] diamond 978 51.2 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae   Leptospiraceae bacterium
31004392 31004392 PRJNA929522_S_NODE_1894_length_483_cov_1.604878_g1824_i0 PRJNA929522 1894 483 1.604878 7.75156074 Treponema sp. 166 Bacteria Bacteria 55.5 6.92e-6   NR MBQ3670459.1 166 g1824 i0 45.1 0.316770186335404 51 28 31.7 0 21 173 163 213 MBQ3670459.1 CAP domain-containing protein [Treponema sp.] diamond 153 55.5 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp.
32711683 32711683 PRJNA929522_S_NODE_7560_length_263_cov_1.452632_g7490_i0 PRJNA929522 7560 263 1.452632 3.82042216 Treponema sp. 166 Bacteria Bacteria 130 4.8e-35   NR MDR1419620.1 166 g7490 i0 72.4 6.96958174904943 87 24 99.2 0 262 2 124 210 MDR1419620.1 SDR family oxidoreductase [Treponema sp.] diamond 1833 130 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;