RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA929522", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 8 ✖

tax_kingdom 1

  • Pseudomonadati · 8 ✖

bioproject 1

  • PRJNA929522 · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6008612 6008612 PRJNA929522_S_NODE_8565_length_250_cov_1.677966_g8495_i0 PRJNA929522 8565 250 1.677966 4.194915 Pseudomonadati 3379134 Bacteria Bacteria 131 5.86e-36   NR MBO9668790.1 28201 g8495 i0 68.7 11.94 83 26 99.6 0 249 1 86 168 MBO9668790.1 PLP-dependent transferase [Bdellovibrio sp.] diamond 2985 132 0.992424242424242 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
20032007 20032007 PRJNA929522_S_NODE_7496_length_264_cov_1.209424_g7426_i0 PRJNA929522 7496 264 1.209424 3.19287936 Bdellovibrio sp. 28201 Bacteria Bacteria 104 6.56e-18   NTclustered gi|289320|gb|M61238.1|BDLDDAI 28201 g7426 i0 80.42 19.4962121212121 143 22 53 6 3 142 742 603 Bdellovibrio sp. 16S rRNA gene, partial cds blastn 5147 104 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
27877759 27877759 PRJNA929522_S_NODE_2685_length_408_cov_2.268657_g2615_i0 PRJNA929522 2685 408 2.268657 9.25612056 Bdellovibrio sp. 28201 Bacteria Bacteria 57.4 1.61e-6   NR RME15219.1 28201 g2615 i0 38.7 1.625 106 58 75 4 316 11 50 152 RME15219.1 MAG: peptidase S8 [Bdellovibrio sp.] diamond 663 57.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
28224858 28224858 PRJNA929522_S_NODE_7686_length_261_cov_1.638298_g7616_i0 PRJNA929522 7686 261 1.638298 4.27595778 Bdellovibrionia bacterium 3034169 Bacteria Bacteria 71.6 3.07e-12   NR MFL5815885.1 3034169 g7616 i0 57.5 0.839080459770115 73 29 83.9 1 236 18 48 118 MFL5815885.1 right-handed parallel beta-helix repeat-containing protein [Bdellovibrionia bacterium] diamond 219 71.6 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia       Bdellovibrionia bacterium
28667269 28667269 PRJNA929522_S_NODE_8947_length_248_cov_0.880000_g8877_i0 PRJNA929522 8947 248 0.88 2.1824 Micavibrio sp. 2024841 Bacteria Bacteria 67.4 2.3e-12   NR HEU4838161.1 2024841 g8877 i0 37.8 3.36290322580645 74 46 89.5 0 247 26 25 98 HEU4838161.1 ETC complex I subunit [Micavibrio sp.] diamond 834 67.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio sp.
32554566 32554566 PRJNA929522_S_NODE_2599_length_415_cov_2.233918_g2529_i0 PRJNA929522 2599 415 2.233918 9.2707597 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 120 2.72e-31   NR MCB0369154.1 2053517 g2529 i0 53.3 1.47469879518072 107 48 75.9 1 412 98 62 168 MCB0369154.1 C39 family peptidase [Bdellovibrionales bacterium] diamond 612 120 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
32617293 32617293 PRJNA929522_S_NODE_9460_length_245_cov_0.895349_g9390_i0 PRJNA929522 9460 245 0.895349 2.19360505 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 60.1 2.09e-8   NR MCB0347311.1 2053517 g9390 i0 46.3 0.979591836734694 80 31 98 1 243 4 76 143 MCB0347311.1 arginine--tRNA ligase [Bdellovibrionales bacterium] diamond 240 60.1 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
32907652 32907652 PRJNA929522_S_NODE_2600_length_415_cov_2.198830_g2530_i0 PRJNA929522 2600 415 2.19883 9.1251445 Bacteria 2 Bacteria Bacteria 118 4.43e-30   NR MCB0416831.1 2053517 g2530 i0 44.9 3.93253012048193 136 69 96.9 3 4 405 55 186 MCB0416831.1 DUF1028 domain-containing protein [Bdellovibrionales bacterium] diamond 1632 119 0.991596638655462 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;