RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA929522", tax_clade = "Sar" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA929522 · 6 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4733803 4733803 PRJNA929522_S_NODE_744_length_726_cov_2.814701_g686_i0 PRJNA929522 744 726 2.814701 20.43472926 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 341 8.05e-114   NR CEP01299.1 37360 g686 i0 68.5 7.00826446280992 241 76 99.6 0 725 3 124 364 CEP01299.1 hypothetical protein PBRA_001905 [Plasmodiophora brassicae] diamond 5088 342 0.997076023391813 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
8558254 8558254 PRJNA929522_S_NODE_267_length_1109_cov_22.952703_g232_i0 PRJNA929522 267 1109 22.952703 254.54547627 Arachnula sp. CL12 862247 SAR_Eukaryotes SAR_Eukaryotes 561 1.4199999999999995e-197   NR ADK90073.1 862247 g232 i0 76 0.957619477006312 354 82 95.8 1 1 1062 91 441 ADK90073.1 elongation factor 1 alpha, partial [Arachnula sp. CL12] diamond 1062 561 1 Eukaryota Sar   Endomyxa   Vampyrellida Leptophryidae Arachnula Arachnula sp. CL12
17483586 17483586 PRJNA929522_S_NODE_9474_length_245_cov_0.895349_g9404_i0 PRJNA929522 9474 245 0.895349 2.19360505 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 121 2.0099999999999997e-30   NR SPQ96286.1 37360 g9404 i0 64.2 19.8244897959184 81 29 99.2 0 3 245 84 164 SPQ96286.1 unnamed protein product [Plasmodiophora brassicae] diamond 4857 122 0.991803278688525 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
27150863 27150863 PRJNA929522_S_NODE_3282_length_370_cov_1.037037_g3212_i0 PRJNA929522 3282 370 1.037037 3.8370369 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 94 3.1e-20   NR CEP00236.1 37360 g3212 i0 51 0.778378378378378 96 45 77 2 286 2 54 148 CEP00236.1 hypothetical protein PBRA_007970 [Plasmodiophora brassicae] diamond 288 94 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
29993413 29993413 PRJNA929522_S_NODE_8551_length_250_cov_2.067797_g8481_i0 PRJNA929522 8551 250 2.067797 5.1694925 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 49.3 1.28e-4   NR CEO95549.1 37360 g8481 i0 39.7 0.876 73 40 86.4 2 32 247 94 163 CEO95549.1 hypothetical protein PBRA_004275 [Plasmodiophora brassicae] diamond 219 49.3 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
32718834 32718834 PRJNA929522_S_NODE_5440_length_300_cov_1.823789_g5370_i0 PRJNA929522 5440 300 1.823789 5.471367 root 1 Root_unresolved Root_unresolved 122 3.9299999999999997e-32   NR CEP00766.1 37360 g5370 i0 65.7 7.85 99 34 99 0 299 3 90 188 CEP00766.1 hypothetical protein PBRA_008078 [Plasmodiophora brassicae] diamond 2355 122 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;