RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA929522", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA929522 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4733758 4733758 PRJNA929522_S_NODE_1084_length_616_cov_14.110497_g371_i2 PRJNA929522 1084 616 14.110497 86.92066152 Longimicrobiales bacterium 2910168 Bacteria Bacteria 102 5.98e-17   NTclustered gi|2575820295|emb|OY730414.1| 2910168 g371 i2 84.112 21.0795454545455 107 15 17 2 141 246 1273691 1273586 MAG: Longimicrobiales bacterium isolate 35361606-ee58-41ba-9638-b7483a57a1ce genome assembly, chromosome: 1 blastn 12985 102 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium
28541048 28541048 PRJNA929522_S_NODE_9987_length_242_cov_0.911243_g9917_i0 PRJNA929522 9987 242 0.911243 2.20520806 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 43.1 0.0259   NR MBN64119.1 2026742 g9917 i0 33.3 0.892561983471074 72 36 79.3 3 25 216 261 328 MBN64119.1 hypothetical protein [Gemmatimonadota bacterium] diamond 216 43.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
30656756 30656756 PRJNA929522_S_NODE_4553_length_322_cov_0.927711_g4483_i0 PRJNA929522 4553 322 0.927711 2.98722942 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 84 3.08e-16   NR MCH7716109.1 2026742 g4483 i0 38 0.93167701863354 100 58 92.2 2 15 311 123 219 MCH7716109.1 alpha/beta fold hydrolase [Gemmatimonadota bacterium] diamond 300 84 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;