RNAquarium Metadata Server
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contig_metadata

16 rows where bioproject = "PRJNA929522", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 16 ✖

tax_clade 1

  • Amoebozoa · 16 ✖

bioproject 1

  • PRJNA929522 · 16 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7631554 7631554 PRJNA929522_S_NODE_1866_length_486_cov_2.474576_g1796_i0 PRJNA929522 1866 486 2.474576 12.02643936 Vannellidae 95227 Discosea other_Eukaryota 712 0   NTclustered gi|62865947|gb|AY929922.1| 325065 g1796 i0 93.469 101.030864197531 490 14 100 14 1 486 1660 1185 Platyamoeba sp. strain CAZ7/I 18S small subunit ribosomal RNA gene, partial sequence blastn 49101 712 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba sp. strain CAZ7/I
8906237 8906237 PRJNA929522_S_NODE_5967_length_289_cov_7.958333_g5897_i0 PRJNA929522 5967 289 7.958333 22.99958237 Ripella 1217112 Discosea other_Eukaryota 431 2.94e-116   NTclustered gi|1269228437|gb|MF683562.1| 2047822 g5897 i0 96.923 87.5882352941177 260 3 89 5 1 257 948 691 Ripella decalvata clone 15101 18S ribosomal RNA gene, partial sequence blastn 25313 433 0.995381062355658 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella decalvata
13659012 13659012 PRJNA929522_S_NODE_8711_length_249_cov_2.846591_g8641_i0 PRJNA929522 8711 249 2.846591 7.08801159 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 114 2.66e-30   NR XP_004368153.1 1257118 g8641 i0 77 1.79518072289157 74 16 88 1 219 1 5 78 XP_004368153.1 ribosomal protein S17, putative [Acanthamoeba castellanii str. Neff] diamond 447 114 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
16208312 16208312 PRJNA929522_S_NODE_793_length_705_cov_6.026899_g732_i0 PRJNA929522 793 705 6.026899 42.48963795 Ripella sp. 805 1217113 Discosea other_Eukaryota 887 0   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g732 i0 95.668 79.3475177304964 554 20 78 4 1 553 551 1 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 55940 887 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
18756906 18756906 PRJNA929522_S_NODE_7835_length_259_cov_1.559140_g7765_i0 PRJNA929522 7835 259 1.55914 4.0381726 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 219 2.2e-52   NTclustered gi|470423206|ref|XM_004337526.1| 1257118 g7765 i0 81.992 36.3861003861004 261 43 100 4 1 259 481 223 Acanthamoeba castellanii str. Neff 3oxoacid CoA transferase 1 isoform 3, putative (ACA1_164100), partial mRNA blastn 9424 219 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
18756912 18756912 PRJNA929522_S_NODE_9395_length_245_cov_1.343023_g9325_i0 PRJNA929522 9395 245 1.343023 3.29040635 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 85.1 4.31e-19   NR 1PRQ_A 5755 g9325 i0 62 2.62040816326531 71 27 86.9 0 214 2 1 71 1PRQ_A Chain A, PROFILIN IA [Acanthamoeba castellanii] diamond 642 85.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
26613177 26613177 PRJNA929522_S_NODE_8501_length_251_cov_0.865169_g8431_i0 PRJNA929522 8501 251 0.865169 2.17157419 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 84 4.8e-17   NR XP_004338044.1 1257118 g8431 i0 54.9 1.86454183266932 71 32 84.9 0 223 11 29 99 XP_004338044.1 K+ channel tetramerization subfamily protein [Acanthamoeba castellanii str. Neff] diamond 468 84 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
26866882 26866882 PRJNA929522_S_NODE_5141_length_307_cov_1.316239_g5071_i0 PRJNA929522 5141 307 1.316239 4.04085373 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 94 8.19e-20   NR XP_004339348.1 1257118 g5071 i0 51 0.996742671009772 102 43 99.7 2 307 2 196 290 XP_004339348.1 glutaminefructose-6-phosphate transaminase (isomerizing), putative [Acanthamoeba castellanii str. Neff] diamond 306 94 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28509284 28509284 PRJNA929522_S_NODE_8047_length_256_cov_1.683060_g7977_i0 PRJNA929522 8047 256 1.68306 4.3086336 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 62 6.97e-9   NR XP_004333665.1 1257118 g7977 i0 44.4 0.73828125 63 30 73.8 1 60 248 275 332 XP_004333665.1 protein kinase 2, putative [Acanthamoeba castellanii str. Neff] diamond 189 62 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29305602 29305602 PRJNA929522_S_NODE_9629_length_244_cov_0.900585_g9559_i0 PRJNA929522 9629 244 0.900585 2.1974274 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 61.2 1.12e-8   NR XP_004338370.1 1257118 g9559 i0 55.9 4.94262295081967 59 26 72.5 0 179 3 766 824 XP_004338370.1 uncharacterized protein ACA1_204440 [Acanthamoeba castellanii str. Neff] diamond 1206 61.6 0.993506493506494 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30056349 30056349 PRJNA929522_S_NODE_8351_length_252_cov_1.290503_g8281_i0 PRJNA929522 8351 252 1.290503 3.25206756 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 90.1 4.34e-19   NR XP_004341369.1 1257118 g8281 i0 52 0.892857142857143 75 36 89.3 0 13 237 54 128 XP_004341369.1 sphingomyelin phosphodiesterase, putative [Acanthamoeba castellanii str. Neff] diamond 225 90.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31517445 31517445 PRJNA929522_S_NODE_7296_length_267_cov_1.278351_g7226_i0 PRJNA929522 7296 267 1.278351 3.41319717 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 103 3.93e-26   NR 7SOG_A 5755 g7226 i0 50 7.85393258426966 84 42 94.4 0 15 266 3 86 7SOG_A Chain A, Actophorin [Acanthamoeba castellanii] diamond 2097 103 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32079571 32079571 PRJNA929522_S_NODE_1298_length_573_cov_2.250000_g1231_i0 PRJNA929522 1298 573 2.25 12.8925 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 103 6.33e-22   NR XP_004338791.1 1257118 g1231 i0 32.1 0.979057591623037 187 123 97.9 2 571 11 173 355 XP_004338791.1 LBP / BPI / CETP family, Cterminal domain containing protein [Acanthamoeba castellanii str. Neff] diamond 561 103 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32079583 32079583 PRJNA929522_S_NODE_9538_length_244_cov_2.233918_g9468_i0 PRJNA929522 9538 244 2.233918 5.45075992 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 108 2.22e-28   NR 7SOG_A 5755 g9468 i0 63 0.995901639344262 81 29 99.6 1 243 1 9 88 7SOG_A Chain A, Actophorin [Acanthamoeba castellanii] diamond 243 108 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32774578 32774578 PRJNA929522_S_NODE_4240_length_332_cov_1.791506_g4170_i0 PRJNA929522 4240 332 1.791506 5.94779992 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 61.6 2.4e-8   NR XP_004338311.1 1257118 g4170 i0 42 0.795180722891566 88 46 75 2 330 82 426 513 XP_004338311.1 protein pns1, putative [Acanthamoeba castellanii str. Neff] diamond 264 61.6 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32837571 32837571 PRJNA929522_S_NODE_1960_length_475_cov_1.380597_g1890_i0 PRJNA929522 1960 475 1.380597 6.55783575 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 117 5.230000000000001e-29   NR XP_004347745.1 1257118 g1890 i0 43 0.953684210526316 151 73 94.1 2 8 454 82 221 XP_004347745.1 uncharacterized protein ACA1_046120 [Acanthamoeba castellanii str. Neff] diamond 453 117 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;