RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA928559", tax_phylum = "Pisuviricota" and tax_superkingdom = "Viruses"

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analysis 2

tax_superkingdom 1

  • Viruses · 7 ✖

tax_phylum 1

  • Pisuviricota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA928559 · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
904042 904042 PRJNA928559_P_NODE_41_length_9217_cov_33.662620_g30_i0 PRJNA928559 41 9217 33.66262 3102.6836854 Betacoronavirus pandemicum 3418604 Viruses Viruses 17016 0   NTclustered gi|1884529248|gb|MT831364.1| 2697049 g30 i0 99.989 100 9217 1 100 0 1 9217 20466 29682 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WA-S2106/2020, complete genome blastn 921700 17016 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
2179339 2179339 PRJNA928559_P_NODE_402_length_4247_cov_11.198610_g301_i0 PRJNA928559 402 4247 11.19861 475.6049667 Kummerowia striata picorna-like virus 2739852 Viruses Viruses 5941 0   NTclustered gi|1851269098|gb|MN832470.1| 2739852 g301 i0 93.662 2.53590769955263 3976 246 94 5 274 4247 7789 3818 Kummerowia striata picorna-like virus strain pt119-pic-7 genomic sequence, sequence blastn 10770 5941 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales     Kummerowia striata picorna-like virus
8557369 8557369 PRJNA928559_P_NODE_7_length_19459_cov_38.316569_g2_i0 PRJNA928559 7 19459 38.316569 7456.02116171 Betacoronavirus pandemicum 3418604 Viruses Viruses 35918 0   NTclustered gi|2054207027|emb|OU183464.1| 2697049 g2 i0 99.985 100.005139010227 19460 2 100 1 1 19459 34 19493 Severe acute respiratory syndrome coronavirus 2 isolate hCoV-19/Iceland/836/2020 genome assembly, chromosome: hCoV-19_Iceland_836_2020 blastn 1946000 35918 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
12381092 12381092 PRJNA928559_P_NODE_10150_length_963_cov_13.192135_g8951_i0 PRJNA928559 10150 963 13.192135 127.04026005 Betacoronavirus pandemicum 3418604 Viruses Viruses 1755 0   NTclustered gi|2125806870|gb|OK670657.1| 2697049 g8951 i0 100 98.5597092419522 950 0 99 0 14 963 20448 19499 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/MN-MDH-14344/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), and membrane glycoprotein (M) genes, complete cds; ORF6 gene, complete sequence; ORF7a protein (ORF7a) and ORF7b (ORF7b) genes, complete cds; ORF8 gene, complete sequence; and nucleocapsid phosphoprotein (N) and ORF10 protein (ORF10) genes, complete cds blastn 94913 1755 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
14932226 14932226 PRJNA928559_P_NODE_632_length_3457_cov_11.764775_g482_i0 PRJNA928559 632 3457 11.764775 406.70827175 Kummerowia striata picorna-like virus 2739852 Viruses Viruses 4723 0   NTclustered gi|1851269098|gb|MN832470.1| 2739852 g482 i0 91.502 1.3153022852184 3436 286 99 6 26 3457 1 3434 Kummerowia striata picorna-like virus strain pt119-pic-7 genomic sequence, sequence blastn 4547 4723 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales     Kummerowia striata picorna-like virus
22580751 22580751 PRJNA928559_P_NODE_220038_length_233_cov_5.725000_g218469_i0 PRJNA928559 220038 233 5.725 13.33925 Sopidub virus 3131684 Viruses Viruses 180 9.169999999999999e-41   NTclustered gi|2717323145|gb|PP173985.1| 3131684 g218469 i0 91.538 24.6351931330472 130 11 56 0 104 233 2130 2259 MAG: Sopidub virus isolate SP1B_k141_213983 genomic sequence blastn 5740 180 1 Viruses   Orthornavirae Pisuviricota Duplopiviricetes Durnavirales Picobirnaviridae   Sopidub virus
26835108 26835108 PRJNA928559_P_NODE_58541_length_454_cov_1.842520_g56974_i0 PRJNA928559 58541 454 1.84252 8.3650408 Ripistub virus 3131286 Viruses Viruses 65.5 2.97e-9   NR WZH61163.1 3131286 g56974 i0 43.4 2.97356828193833 83 38 54.8 1 176 424 109 182 WZH61163.1 MAG: RNA-dependent RNA polymerase, partial [Ripistub virus] diamond 1350 65.5 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Sobelivirales     Ripistub virus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;