RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where bioproject = "PRJNA928559" and tax_phylum = "Cryptomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Cryptomycota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA928559 · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
903437 903437 PRJNA928559_P_NODE_206141_length_245_cov_1.697674_g204572_i0 PRJNA928559 206141 245 1.697674 4.1593013 Paramicrosporidium saccamoebae 1246581 Fungi Fungi 104 6.82e-25   NR PJF19907.1 1246581 g204572 i0 61.7 1.97142857142857 81 28 99.2 1 244 2 179 256 PJF19907.1 Isobutyryl-CoA dehydrogenase [Paramicrosporidium saccamoebae] diamond 483 104 1 Eukaryota Opisthokonta Fungi Cryptomycota       Paramicrosporidium Paramicrosporidium saccamoebae
6005575 6005575 PRJNA928559_P_NODE_134905_length_305_cov_2.000000_g133336_i0 PRJNA928559 134905 305 2 6.1 Rozella sp. 1932610 Fungi Fungi 158 5.86e-34   NTclustered gi|2468791040|gb|OQ702927.1| 1932610 g133336 i0 82.447 48.4327868852459 188 26 61 4 115 301 4099 4280 Rozella sp. isolate PSC259 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 14772 158 1 Eukaryota Opisthokonta Fungi Cryptomycota       Rozella Rozella sp.
12382234 12382234 PRJNA928559_P_NODE_184090_length_255_cov_4.285714_g182521_i0 PRJNA928559 184090 255 4.285714 10.9285707 uncultured Cryptomycota 1130064 Fungi Fungi 230 9.969999999999999e-56   NTclustered gi|2086101716|gb|MZ923277.1| 1130064 g182521 i0 83.333 99.9098039215686 258 33 100 9 1 255 405 655 Uncultured Cryptomycota clone UMPB-265 small subunit ribosomal RNA gene, partial sequence blastn 25477 230 1 Eukaryota Opisthokonta Fungi Cryptomycota         uncultured Cryptomycota
26810436 26810436 PRJNA928559_P_NODE_141221_length_297_cov_3.535714_g139652_i0 PRJNA928559 141221 297 3.535714 10.50107058 Fungi 4751 Fungi Fungi 78.6 1.86e-14   NR EPZ31296.1 988480 g139652 i0 43.4 2 99 56 100 0 297 1 523 621 EPZ31296.1 Ribosomal protein S3Ae domain-containing protein [Rozella allomycis CSF55] diamond 594 79 0.994936708860759 Eukaryota Opisthokonta Fungi Cryptomycota       Rozella Rozella allomycis
28162009 28162009 PRJNA928559_P_NODE_195805_length_249_cov_35.164773_g194236_i0 PRJNA928559 195805 249 35.164773 87.56028477 Rozella allomycis CSF55 988480 Fungi Fungi 82.4 7.78e-17   NR EPZ34692.1 988480 g194236 i0 66.2 3.78313253012048 65 21 77.1 1 26 217 190 254 EPZ34692.1 Nucleic acid-binding domain-containing protein [Rozella allomycis CSF55] diamond 942 82.4 1 Eukaryota Opisthokonta Fungi Cryptomycota       Rozella Rozella allomycis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;