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contig_metadata

27 rows where bioproject = "PRJNA928559" and tax_kingdom = "Orthornavirae"

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tax_superkingdom 1

tax_kingdom 1

  • Orthornavirae · 27 ✖

bioproject 1

  • PRJNA928559 · 27 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
904042 904042 PRJNA928559_P_NODE_41_length_9217_cov_33.662620_g30_i0 PRJNA928559 41 9217 33.66262 3102.6836854 Betacoronavirus pandemicum 3418604 Viruses Viruses 17016 0   NTclustered gi|1884529248|gb|MT831364.1| 2697049 g30 i0 99.989 100 9217 1 100 0 1 9217 20466 29682 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WA-S2106/2020, complete genome blastn 921700 17016 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
2179339 2179339 PRJNA928559_P_NODE_402_length_4247_cov_11.198610_g301_i0 PRJNA928559 402 4247 11.19861 475.6049667 Kummerowia striata picorna-like virus 2739852 Viruses Viruses 5941 0   NTclustered gi|1851269098|gb|MN832470.1| 2739852 g301 i0 93.662 2.53590769955263 3976 246 94 5 274 4247 7789 3818 Kummerowia striata picorna-like virus strain pt119-pic-7 genomic sequence, sequence blastn 10770 5941 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales     Kummerowia striata picorna-like virus
2179707 2179707 PRJNA928559_P_NODE_70622_length_419_cov_1.511561_g69053_i0 PRJNA928559 70622 419 1.511561 6.33344059 Sopaded virus 3131761 Viruses Viruses 97.1 1.84e-15   NTclustered gi|2717323334|gb|PP174062.1| 3131761 g69053 i0 78.947 4.00954653937947 152 24 35 8 28 175 482 335 MAG: Sopaded virus isolate SP1C_k141_196651 genomic sequence blastn 1680 97.1 1 Viruses   Orthornavirae Lenarviricota Leviviricetes       Sopaded virus
4731570 4731570 PRJNA928559_P_NODE_185284_length_254_cov_10.353591_g183715_i0 PRJNA928559 185284 254 10.353591 26.29812114 Ripaglys virus 3130696 Viruses Viruses 196 1.01e-45   NTclustered gi|2717320496|gb|PP172998.1| 3130696 g183715 i0 84.5 497.007874015748 200 30 79 1 31 230 2694 2496 MAG: Ripaglys virus isolate KCAP2_k141_358354 genomic sequence blastn 126240 196 1 Viruses   Orthornavirae Lenarviricota Leviviricetes       Ripaglys virus
8557369 8557369 PRJNA928559_P_NODE_7_length_19459_cov_38.316569_g2_i0 PRJNA928559 7 19459 38.316569 7456.02116171 Betacoronavirus pandemicum 3418604 Viruses Viruses 35918 0   NTclustered gi|2054207027|emb|OU183464.1| 2697049 g2 i0 99.985 100.005139010227 19460 2 100 1 1 19459 34 19493 Severe acute respiratory syndrome coronavirus 2 isolate hCoV-19/Iceland/836/2020 genome assembly, chromosome: hCoV-19_Iceland_836_2020 blastn 1946000 35918 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
9830104 9830104 PRJNA928559_P_NODE_132168_length_308_cov_14.906383_g130599_i0 PRJNA928559 132168 308 14.906383 45.91165964 Chrocagost virus 3129398 Viruses Viruses 311 4.3e-80   NTclustered gi|2717317482|gb|PP171846.1| 3129398 g130599 i0 85.522 294.142857142857 297 43 96 0 1 297 5566 5862 MAG: Chrocagost virus isolate CC1A_k141_84256 genomic sequence blastn 90596 311 1 Viruses   Orthornavirae Lenarviricota Amabiliviricetes       Chrocagost virus
11107080 11107080 PRJNA928559_P_NODE_211989_length_243_cov_0.917647_g210420_i0 PRJNA928559 211989 243 0.917647 2.22988221 Ripaglys virus 3130696 Viruses Viruses 261 3.34e-65   NTclustered gi|2717320496|gb|PP172998.1| 3130696 g210420 i0 86.307 240.584362139918 241 31 99 2 1 240 171 410 MAG: Ripaglys virus isolate KCAP2_k141_358354 genomic sequence blastn 58462 261 1 Viruses   Orthornavirae Lenarviricota Leviviricetes       Ripaglys virus
11107918 11107918 PRJNA928559_P_NODE_69489_length_422_cov_1.762178_g67920_i0 PRJNA928559 69489 422 1.762178 7.43639116 Chrocagost virus 3129398 Viruses Viruses 483 1.22e-131   NTclustered gi|2717317482|gb|PP171846.1| 3129398 g67920 i0 87.952 478.682464454976 415 43 97 7 1 411 5451 5862 MAG: Chrocagost virus isolate CC1A_k141_84256 genomic sequence blastn 202004 483 1 Viruses   Orthornavirae Lenarviricota Amabiliviricetes       Chrocagost virus
11108236 11108236 PRJNA928559_P_NODE_93789_length_368_cov_1.579661_g92220_i0 PRJNA928559 93789 368 1.579661 5.81315248 Ripaglys virus 3130696 Viruses Viruses 250 1.15e-61   NTclustered gi|2717320496|gb|PP172998.1| 3130696 g92220 i0 86.996 40.0788043478261 223 27 60 2 129 350 952 1173 MAG: Ripaglys virus isolate KCAP2_k141_358354 genomic sequence blastn 14749 250 1 Viruses   Orthornavirae Lenarviricota Leviviricetes       Ripaglys virus
12381092 12381092 PRJNA928559_P_NODE_10150_length_963_cov_13.192135_g8951_i0 PRJNA928559 10150 963 13.192135 127.04026005 Betacoronavirus pandemicum 3418604 Viruses Viruses 1755 0   NTclustered gi|2125806870|gb|OK670657.1| 2697049 g8951 i0 100 98.5597092419522 950 0 99 0 14 963 20448 19499 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/MN-MDH-14344/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), and membrane glycoprotein (M) genes, complete cds; ORF6 gene, complete sequence; ORF7a protein (ORF7a) and ORF7b (ORF7b) genes, complete cds; ORF8 gene, complete sequence; and nucleocapsid phosphoprotein (N) and ORF10 protein (ORF10) genes, complete cds blastn 94913 1755 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
14932226 14932226 PRJNA928559_P_NODE_632_length_3457_cov_11.764775_g482_i0 PRJNA928559 632 3457 11.764775 406.70827175 Kummerowia striata picorna-like virus 2739852 Viruses Viruses 4723 0   NTclustered gi|1851269098|gb|MN832470.1| 2739852 g482 i0 91.502 1.3153022852184 3436 286 99 6 26 3457 1 3434 Kummerowia striata picorna-like virus strain pt119-pic-7 genomic sequence, sequence blastn 4547 4723 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales     Kummerowia striata picorna-like virus
16205737 16205737 PRJNA928559_P_NODE_160893_length_276_cov_5.014778_g159324_i0 PRJNA928559 160893 276 5.014778 13.84078728 Sopazov virus 3131687 Viruses Viruses 313 1.05e-80   NTclustered gi|2717323152|gb|PP173988.1| 3131687 g159324 i0 87.546 40.018115942029 273 31 98 3 1 271 53 324 MAG: Sopazov virus isolate SP1B_k141_222276 genomic sequence blastn 11045 313 1 Viruses   Orthornavirae Lenarviricota Leviviricetes       Sopazov virus
16206427 16206427 PRJNA928559_P_NODE_206913_length_245_cov_0.906977_g205344_i0 PRJNA928559 206913 245 0.906977 2.22209365 Chrocurosk virus 3129322 Viruses Viruses 274 4.34e-69   NTclustered gi|2717317280|gb|PP171770.1| 3129322 g205344 i0 87.712 227.959183673469 236 27 96 2 5 239 1662 1896 MAG: Chrocurosk virus isolate CC1A_k141_129357 genomic sequence blastn 55850 274 1 Viruses   Orthornavirae Duplornaviricota Chrymotiviricetes Ghabrivirales Totiviridae   Chrocurosk virus
18756115 18756115 PRJNA928559_P_NODE_88755_length_377_cov_6.108553_g87186_i0 PRJNA928559 88755 377 6.108553 23.02924481 Chrocaferb virus 3129387 Viruses Viruses 316 1.15e-81   NTclustered gi|2717317453|gb|PP171835.1| 3129387 g87186 i0 82.4 13.0238726790451 375 54 98 11 1 369 68 436 MAG: Chrocaferb virus isolate CC1A_k141_77359 genomic sequence blastn 4910 316 1 Viruses   Orthornavirae Lenarviricota Amabiliviricetes       Chrocaferb virus
20030172 20030172 PRJNA928559_P_NODE_218976_length_235_cov_14.888889_g217407_i0 PRJNA928559 218976 235 14.888889 34.98888915 Ripaglys virus 3130696 Viruses Viruses 213 9.13e-51   NTclustered gi|2717320496|gb|PP172998.1| 3130696 g217407 i0 86 408.340425531915 200 27 85 1 31 230 2694 2496 MAG: Ripaglys virus isolate KCAP2_k141_358354 genomic sequence blastn 95960 213 1 Viruses   Orthornavirae Lenarviricota Leviviricetes       Ripaglys virus
22580751 22580751 PRJNA928559_P_NODE_220038_length_233_cov_5.725000_g218469_i0 PRJNA928559 220038 233 5.725 13.33925 Sopidub virus 3131684 Viruses Viruses 180 9.169999999999999e-41   NTclustered gi|2717323145|gb|PP173985.1| 3131684 g218469 i0 91.538 24.6351931330472 130 11 56 0 104 233 2130 2259 MAG: Sopidub virus isolate SP1B_k141_213983 genomic sequence blastn 5740 180 1 Viruses   Orthornavirae Pisuviricota Duplopiviricetes Durnavirales Picobirnaviridae   Sopidub virus
26739484 26739484 PRJNA928559_P_NODE_178901_length_260_cov_1.582888_g177332_i0 PRJNA928559 178901 260 1.582888 4.1155088 ssRNA phage SRR79763 2846170 Viruses Viruses 50.4 8.57e-5   NR YP_010771095.1 2786661 g177332 i0 54.3 0.530769230769231 46 16 48.5 2 157 32 119 163 YP_010771095.1 maturation protein, partial [ssRNA phage SRR7976301_11] diamond 138 50.4 1 Viruses   Orthornavirae Lenarviricota Leviviricetes Timlovirales Steitzviridae Sdenfavirus Sdenfavirus sp. 'asiovicinum'
26835108 26835108 PRJNA928559_P_NODE_58541_length_454_cov_1.842520_g56974_i0 PRJNA928559 58541 454 1.84252 8.3650408 Ripistub virus 3131286 Viruses Viruses 65.5 2.97e-9   NR WZH61163.1 3131286 g56974 i0 43.4 2.97356828193833 83 38 54.8 1 176 424 109 182 WZH61163.1 MAG: RNA-dependent RNA polymerase, partial [Ripistub virus] diamond 1350 65.5 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Sobelivirales     Ripistub virus
27372803 27372803 PRJNA928559_P_NODE_187883_length_253_cov_0.866667_g186314_i0 PRJNA928559 187883 253 0.866667 2.19266751 Macrophomina phaseolina umbra-like virus 1 2741665 Viruses Viruses 103 1.8899999999999998e-24   NR QOE55593.1 2741665 g186314 i0 66.3 0.948616600790514 80 27 94.9 0 2 241 195 274 QOE55593.1 hypothetical protein [Macrophomina phaseolina umbra-like virus 1] diamond 240 103 1 Viruses   Orthornavirae Kitrinoviricota Tolucaviricetes Tolivirales Tombusviridae Umbravirus Macrophomina phaseolina umbra-like virus 1
27404262 27404262 PRJNA928559_P_NODE_65543_length_432_cov_6.181058_g63974_i0 PRJNA928559 65543 432 6.181058 26.70217056 Chronawunb virus 3129988 Viruses Viruses 59.7 1.37e-7   NR WZH59067.1 3129988 g63974 i0 37.5 1.48611111111111 104 65 72.2 0 431 120 108 211 WZH59067.1 MAG: RNA-dependent RNA polymerase, partial [Chronawunb virus] diamond 642 59.7 1 Viruses   Orthornavirae Lenarviricota Amabiliviricetes Wolframvirales Narnaviridae   Chronawunb virus
27884805 27884805 PRJNA928559_P_NODE_166465_length_271_cov_2.060606_g164896_i0 PRJNA928559 166465 271 2.060606 5.58424226 Cystovirus 10878 Viruses Viruses 108 1.04e-25   NR UNI73393.1 2917704 g164896 i0 56.7 1.99261992619926 90 39 99.6 0 1 270 20 109 UNI73393.1 RNA dependent RNA polymerase [Pseudomonas phage ER16] diamond 540 108 1 Viruses   Orthornavirae Duplornaviricota Vidaverviricetes Mindivirales Cystoviridae   Pseudomonas phage ER16
28288023 28288023 PRJNA928559_P_NODE_36866_length_547_cov_3.829114_g35315_i0 PRJNA928559 36866 547 3.829114 20.94525358 Chronakynb virus 3129881 Viruses Viruses 89.4 5.2e-17   NR WZH58918.1 3129881 g35315 i0 34.8 0.89945155393053 164 97 85.6 4 15 482 62 223 WZH58918.1 MAG: RNA-dependent RNA polymerase, partial [Chronakynb virus] diamond 492 89.4 1 Viruses   Orthornavirae Lenarviricota Amabiliviricetes Wolframvirales Narnaviridae   Chronakynb virus
28990213 28990213 PRJNA928559_P_NODE_129408_length_312_cov_1.958159_g127839_i0 PRJNA928559 129408 312 1.958159 6.10945608 Viruses 10239 Viruses Viruses 44.7 0.0169   NR WAK75317.1 2583949 g127839 i0 35.6 3 104 57 99 5 310 2 294 388 WAK75317.1 MAG: RNA-dependent RNA polymerase [Narnaviridae sp.] diamond 936 44.7 1 Viruses   Orthornavirae Lenarviricota Amabiliviricetes Wolframvirales Narnaviridae   Narnaviridae sp.
29526763 29526763 PRJNA928559_P_NODE_149690_length_288_cov_1.451163_g148121_i0 PRJNA928559 149690 288 1.451163 4.17934944 Negarnaviricota 2497569 Viruses Viruses 47 0.00212   NR UUW20965.1 2970002 g148121 i0 44.4 2.26041666666667 63 32 62.5 1 236 57 1062 1124 UUW20965.1 MAG: RNA-dependent RNA polymerase [Sanya bunya-like virus 18] diamond 651 47 1 Viruses   Orthornavirae Negarnaviricota Ellioviricetes Bunyavirales     Sanya bunya-like virus 18
29747429 29747429 PRJNA928559_P_NODE_47430_length_495_cov_1.883886_g45868_i0 PRJNA928559 47430 495 1.883886 9.3252357 Narnavirus 186767 Viruses Viruses 54.7 3.38e-5   NR CAK7594509.1 2587225 g45868 i0 27.2 2.84848484848485 147 71 88.5 3 3 440 539 650 CAK7594509.1 RNA-dependent RNA polymerase [Narnavirus sp.] diamond 1410 55.1 0.992740471869329 Viruses   Orthornavirae Lenarviricota Amabiliviricetes Wolframvirales Narnaviridae Narnavirus Narnavirus sp.
31699901 31699901 PRJNA928559_P_NODE_116957_length_329_cov_3.625000_g115388_i0 PRJNA928559 116957 329 3.625 11.92625 Leptosphaeria biglobosa narnavirus 9 2985684 Viruses Viruses 89 5.85e-18   NR UYL94476.1 2985684 g115388 i0 45 0.993920972644377 109 58 99.4 2 2 328 142 248 UYL94476.1 MAG: RNA-dependent RNA polymerase [Leptosphaeria biglobosa narnavirus 9] diamond 327 89 1 Viruses   Orthornavirae Lenarviricota Amabiliviricetes Wolframvirales Narnaviridae Narnavirus Leptosphaeria biglobosa narnavirus 9
32150071 32150071 PRJNA928559_P_NODE_164718_length_273_cov_1.470000_g163149_i0 PRJNA928559 164718 273 1.47 4.0131 Mitovirus 186768 Viruses Viruses 75.9 1.12e-13   NR DBA06308.1 2993407 g163149 i0 46.7 1.97802197802198 90 48 98.9 0 271 2 37 126 DBA06308.1 TPA_asm: RdRp, partial [Austropotamobius pallipes associated mitovirus 1] diamond 540 76.3 0.99475753604194 Viruses   Orthornavirae Lenarviricota Howeltoviricetes Cryppavirales Mitoviridae Mitovirus Austropotamobius pallipes associated mitovirus 1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;