RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

26 rows where bioproject = "PRJNA928559", tax_kingdom = "Methanobacteriati" and tax_phylum = "Methanobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 26 ✖

tax_kingdom 1

  • Methanobacteriati · 26 ✖

bioproject 1

  • PRJNA928559 · 26 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
904012 904012 PRJNA928559_P_NODE_39441_length_532_cov_5347.211329_g37886_i0 PRJNA928559 39441 532 5347.211329 28447.16427028 uncultured Methanoregula sp. 1005933 Archaea Archaea 730 0   NTclustered gi|2621785414|emb|OY781872.1| 1005933 g37886 i0 93.227 284.716165413534 502 25 94 9 1 498 3114894 3114398 MAG: uncultured Methanoregula sp. isolate a338d9b7-13de-4e9d-8f1a-cfe667c23436 genome assembly, chromosome: 1 blastn 151469 730 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula uncultured Methanoregula sp.
1253224 1253224 PRJNA928559_P_NODE_88381_length_378_cov_2.704918_g86812_i0 PRJNA928559 88381 378 2.704918 10.22459004 Archaea 2157 Archaea Archaea 237 9.26e-58   NTclustered gi|663518477|gb|KF900844.1| 1456434 g86812 i0 78.249 32.1058201058201 377 76 99 4 1 374 1955 2328 Uncultured marine group II/III euryarchaeote KM3_33_C12 genomic sequence blastn 12136 237 1 Archaea   Methanobacteriati Methanobacteriota         uncultured marine group II/III euryarchaeote KM3_33_C12
2178414 2178414 PRJNA928559_P_NODE_183162_length_256_cov_2.513661_g181593_i0 PRJNA928559 183162 256 2.513661 6.43497216 uncultured Methanoregula sp. 1005933 Archaea Archaea 390 4.3399999999999997e-104   NTclustered gi|2621785414|emb|OY781872.1| 1005933 g181593 i0 94.141 112.66796875 256 15 100 0 1 256 3089861 3090116 MAG: uncultured Methanoregula sp. isolate a338d9b7-13de-4e9d-8f1a-cfe667c23436 genome assembly, chromosome: 1 blastn 28843 390 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula uncultured Methanoregula sp.
2528566 2528566 PRJNA928559_P_NODE_188402_length_253_cov_0.866667_g186833_i0 PRJNA928559 188402 253 0.866667 2.19266751 root 1 Root_unresolved Root_unresolved 52.8 0.023   NTclustered gi|2224381021|gb|CP095390.1| 1419050 g186833 i0 100 0.553359683794466 28 0 11 0 75 102 1418096 1418123 Natribaculum breve strain TRM20010 chromosome, complete genome blastn 140 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natribaculum Natribaculum breve
4732477 4732477 PRJNA928559_P_NODE_42584_length_516_cov_21317.155756_g41026_i0 PRJNA928559 42584 516 21317.155756 109996.52370096 uncultured Methanoregula sp. 1005933 Archaea Archaea 937 0   NTclustered gi|2621785414|emb|OY781872.1| 1005933 g41026 i0 99.419 309.87015503876 516 3 100 0 1 516 3117554 3117039 MAG: uncultured Methanoregula sp. isolate a338d9b7-13de-4e9d-8f1a-cfe667c23436 genome assembly, chromosome: 1 blastn 159893 937 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula uncultured Methanoregula sp.
7282277 7282277 PRJNA928559_P_NODE_5946_length_1222_cov_4.832898_g5046_i0 PRJNA928559 5946 1222 4.832898 59.05801356 uncultured Methanoregula sp. 1005933 Archaea Archaea 1194 0   NTclustered gi|2621785414|emb|OY781872.1| 1005933 g5046 i0 84.653 44.6039279869067 1238 147 99 22 1 1210 3123961 3122739 MAG: uncultured Methanoregula sp. isolate a338d9b7-13de-4e9d-8f1a-cfe667c23436 genome assembly, chromosome: 1 blastn 54506 1194 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula uncultured Methanoregula sp.
9831104 9831104 PRJNA928559_P_NODE_199888_length_248_cov_0.891429_g198319_i0 PRJNA928559 199888 248 0.891429 2.21074392 Methanothrix soehngenii 2223 Archaea Archaea 381 2.519999999999999e-101   NTclustered gi|328927127|gb|CP002565.1| 990316 g198319 i0 100 45.6693548387097 206 0 100 0 43 248 838476 838271 Methanosaeta concilii GP-6, complete genome blastn 11326 381 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix soehngenii
16205961 16205961 PRJNA928559_P_NODE_175593_length_263_cov_1.415789_g174024_i0 PRJNA928559 175593 263 1.415789 3.72352507 Halorubrum sp. 2020YC2 2836432 Archaea Archaea 52.8 0.024   NTclustered gi|2047351610|gb|CP076019.1| 2836432 g174024 i0 100 0.106463878326996 28 0 11 0 32 59 1404453 1404426 Halorubrum sp. 2020YC2 chromosome, complete genome blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum sp. 2020YC2
19104054 19104054 PRJNA928559_P_NODE_10695_length_940_cov_7.726644_g9471_i0 PRJNA928559 10695 940 7.726644 72.6304536 Archaea 2157 Archaea Archaea 163 4.21e-35   NTclustered gi|314912325|gb|HQ692040.1| 114243 g9471 i0 75.532 38.718085106383 376 68 38 18 153 512 1287 920 Uncultured euryarchaeote clone ClipA 5 16S ribosomal RNA gene, partial sequence blastn 36395 163 1 Archaea   Methanobacteriati Methanobacteriota         uncultured euryarchaeote
23855492 23855492 PRJNA928559_P_NODE_192679_length_251_cov_0.876404_g191110_i0 PRJNA928559 192679 251 0.876404 2.19977404 Halosimplex aquaticum 3026162 Archaea Archaea 52.8 0.023   NTclustered gi|2446562038|gb|CP118158.1| 3026162 g191110 i0 96.774 0.123505976095618 31 1 12 0 189 219 1866552 1866582 Halosimplex aquaticum strain XZYJT29 chromosome, complete genome blastn 31 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Halosimplex Halosimplex aquaticum
25129264 25129264 PRJNA928559_P_NODE_18760_length_729_cov_2.637195_g17313_i0 PRJNA928559 18760 729 2.637195 19.22515155 uncultured marine group II/III euryarchaeote KM3_203_F09 1456423 Archaea Archaea 398 8.139999999999997e-106   NTclustered gi|663517090|gb|KF900805.1| 1456423 g17313 i0 86.179 93.4389574759945 369 49 50 2 57 424 11179 10812 Uncultured marine group II/III euryarchaeote KM3_203_F09 genomic sequence blastn 68117 398 1 Archaea   Methanobacteriati Methanobacteriota         uncultured marine group II/III euryarchaeote KM3_203_F09
25130275 25130275 PRJNA928559_P_NODE_52280_length_475_cov_9.927861_g50714_i0 PRJNA928559 52280 475 9.927861 47.15733975 uncultured Methanoregula sp. 1005933 Archaea Archaea 717 0   NTclustered gi|2621785414|emb|OY781872.1| 1005933 g50714 i0 94.433 91.2168421052632 467 25 98 1 9 474 3123729 3124195 MAG: uncultured Methanoregula sp. isolate a338d9b7-13de-4e9d-8f1a-cfe667c23436 genome assembly, chromosome: 1 blastn 43328 717 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula uncultured Methanoregula sp.
25479276 25479276 PRJNA928559_P_NODE_136400_length_303_cov_2.443478_g134831_i0 PRJNA928559 136400 303 2.443478 7.40373834 Archaea 2157 Archaea Archaea 161 4.49e-35   NTclustered gi|663527907|gb|KF901100.1| 1456516 g134831 i0 82.292 35 192 28 62 6 13 201 24684 24496 Uncultured marine group II/III euryarchaeote KM3_80_H04 genomic sequence blastn 10605 161 1 Archaea   Methanobacteriati Methanobacteriota         uncultured marine group II/III euryarchaeote KM3_80_H04
25479515 25479515 PRJNA928559_P_NODE_204900_length_246_cov_0.901734_g203331_i0 PRJNA928559 204900 246 0.901734 2.21826564 Halobacteriales 2235 Archaea Archaea 449 6.74e-122   NTclustered gi|1675275423|gb|MN000441.1| 2243 g203331 i0 99.593 100 246 1 100 0 1 246 678 433 Halobacterium sp. strain PTA096 16S ribosomal RNA gene, partial sequence blastn 24600 449 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halobacterium Halobacterium sp.
26905476 26905476 PRJNA928559_P_NODE_188181_length_253_cov_0.866667_g186612_i0 PRJNA928559 188181 253 0.866667 2.19266751 Archaea 2157 Archaea Archaea 55.1 1.09e-6   NR RMG30150.1 2026739 g186612 i0 40 1.68379446640316 70 42 83 0 215 6 7 76 RMG30150.1 MAG: aquaporin [Methanobacteriota archaeon] diamond 426 55.1 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon
27814769 27814769 PRJNA928559_P_NODE_191004_length_252_cov_0.871508_g189435_i0 PRJNA928559 191004 252 0.871508 2.19620016 Methanobacteriota archaeon 2026739 Archaea Archaea 117 1.5e-28   NR RYE98581.1 2026739 g189435 i0 65 0.952380952380952 80 28 95.2 0 11 250 492 571 RYE98581.1 MAG: protein kinase, partial [Methanobacteriota archaeon] diamond 240 117 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon
27821901 27821901 PRJNA928559_P_NODE_4384_length_1414_cov_4.498136_g3634_i0 PRJNA928559 4384 1414 4.498136 63.60364304 root 1 Root_unresolved Root_unresolved 123 4.41e-29   NR HET8689243.1 2213 g3634 i0 65.9 0.386138613861386 88 29 18.7 1 1149 1412 18 104 HET8689243.1 hypothetical protein [Methanosarcina sp.] diamond 546 124 0.991935483870968 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.
28572258 28572258 PRJNA928559_P_NODE_173007_length_265_cov_1.947917_g171438_i0 PRJNA928559 173007 265 1.947917 5.16198005 Methanobacteriota archaeon 2026739 Archaea Archaea 51.2 1.41e-6   NR PXF18799.1 2026739 g171438 i0 56.3 0.362264150943396 32 14 36.2 0 264 169 3 34 PXF18799.1 MAG: hypothetical protein CXX76_01005 [Methanobacteriota archaeon] diamond 96 51.2 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon
28667167 28667167 PRJNA928559_P_NODE_144547_length_294_cov_0.814480_g142978_i0 PRJNA928559 144547 294 0.81448 2.3945712 Haloferax volcanii 2246 Archaea Archaea 45.1 0.00344   NR WP_144859680.1 2246 g142978 i0 43.8 0.979591836734694 48 23 49 1 61 204 17 60 WP_144859680.1 aminotransferase class V-fold PLP-dependent enzyme, partial [Haloferax volcanii] diamond 288 45.1 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloferax Haloferax volcanii
29747433 29747433 PRJNA928559_P_NODE_87150_length_381_cov_1.545455_g85581_i0 PRJNA928559 87150 381 1.545455 5.88818355 root 1 Root_unresolved Root_unresolved 141 3.35e-39   NR WP_011450032.1 2203 g85581 i0 56.7 2.01574803149606 127 45 100 2 1 381 62 178 WP_011450032.1 pseudaminic acid cytidylyltransferase [Methanospirillum hungatei] diamond 768 141 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanospirillaceae Methanospirillum Methanospirillum hungatei
30119464 30119464 PRJNA928559_P_NODE_191812_length_251_cov_1.752809_g190243_i0 PRJNA928559 191812 251 1.752809 4.39955059 Methanobacterium alkalithermotolerans 2731220 Archaea Archaea 45.4 0.00425   NR QUH24244.1 2731220 g190243 i0 44.2 1.02788844621514 43 24 51.4 0 249 121 103 145 QUH24244.1 ADP-ribosylglycohydrolase family protein [Methanobacterium alkalithermotolerans] diamond 258 45.4 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium alkalithermotolerans
31383730 31383730 PRJNA928559_P_NODE_161336_length_276_cov_1.807882_g159767_i0 PRJNA928559 161336 276 1.807882 4.98975432 Candidatus Methanofastidiosia archaeon 2099674 Archaea Archaea 47 0.00173   NR MDD4281430.1 2099674 g159767 i0 38 1.80434782608696 79 37 85.9 3 268 32 449 515 MDD4281430.1 tetratricopeptide repeat protein [Candidatus Methanofastidiosia archaeon] diamond 498 47 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Candidatus Methanofastidiosia       Candidatus Methanofastidiosia archaeon
31541884 31541884 PRJNA928559_P_NODE_174496_length_264_cov_1.308901_g172927_i0 PRJNA928559 174496 264 1.308901 3.45549864 Methanopyrus sp. SNP6 1937005 Archaea Archaea 43.1 0.0335   NR WP_168168609.1 1937005 g172927 i0 42.2 0.727272727272727 64 34 71.6 2 208 20 178 239 WP_168168609.1 molybdopterin molybdotransferase MoeA [Methanopyrus sp. SNP6] diamond 192 43.1 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanopyri Methanopyrales Methanopyraceae Methanopyrus Methanopyrus sp. SNP6
31605065 31605065 PRJNA928559_P_NODE_119436_length_326_cov_1.320158_g117867_i0 PRJNA928559 119436 326 1.320158 4.30371508 Halonotius pteroides 268735 Archaea Archaea 59.3 1.58e-7   NR WP_133305096.1 268735 g117867 i0 45.5 1.69325153374233 112 52 99.4 5 3 326 920 1026 WP_133305096.1 GLUG motif-containing protein [Halonotius pteroides] diamond 552 59.3 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halonotius Halonotius pteroides
31675324 31675324 PRJNA928559_P_NODE_149217_length_288_cov_3.139535_g147648_i0 PRJNA928559 149217 288 3.139535 9.0418608 root 1 Root_unresolved Root_unresolved 110 3.58e-27   NR HET8689265.1 2213 g147648 i0 60 7.91666666666667 95 38 99 0 286 2 12 106 HET8689265.1 hypothetical protein [Methanosarcina sp.] diamond 2280 111 0.990990990990991 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.
32869074 32869074 PRJNA928559_P_NODE_193260_length_251_cov_0.876404_g191691_i0 PRJNA928559 193260 251 0.876404 2.19977404 Thermococcus sp. 35749 Archaea Archaea 94.7 5.84e-21   NR WP_297490927.1 35749 g191691 i0 61.4 7.9601593625498 83 29 99.2 1 249 1 15 94 WP_297490927.1 L-threonylcarbamoyladenylate synthase [Thermococcus sp.] diamond 1998 94.7 1 Archaea   Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;