RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA928559" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 4 ✖

bioproject 1

  • PRJNA928559 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3453600 3453600 PRJNA928559_P_NODE_158863_length_278_cov_5.521951_g157294_i0 PRJNA928559 158863 278 5.521951 15.35102378 Cetobacterium somerae 188913 Bacteria Bacteria 486 5.919999999999998e-133   NTclustered gi|2666488225|gb|CP143319.1| 188913 g157294 i0 98.201 15.794964028777 278 5 100 0 1 278 1948476 1948753 Cetobacterium somerae strain ceto chromosome, complete genome blastn 4391 486 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
6006204 6006204 PRJNA928559_P_NODE_175545_length_263_cov_1.494737_g173976_i0 PRJNA928559 175545 263 1.494737 3.93115831 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 425 1.2299999999999999e-114   NTclustered gi|922689899|gb|CP012410.1| 712357 g173976 i0 95.817 419.148288973384 263 11 100 0 1 263 53620 53882 Leptotrichia sp. oral taxon 212 strain W10393, complete genome blastn 110236 425 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212
9832141 9832141 PRJNA928559_P_NODE_67548_length_427_cov_1.824859_g65979_i0 PRJNA928559 67548 427 1.824859 7.79214793 Fusobacterium mortiferum 850 Bacteria Bacteria 778 0   NTclustered gi|1370540179|gb|CP028102.1| 469616 g65979 i0 99.532 523.451990632318 427 2 100 0 1 427 104733 104307 Fusobacterium mortiferum ATCC 9817 chromosome, complete genome blastn 223514 778 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium mortiferum
22579973 22579973 PRJNA928559_P_NODE_165078_length_272_cov_6.341709_g163509_i0 PRJNA928559 165078 272 6.341709 17.24944848 Fusobacterium mortiferum 850 Bacteria Bacteria 503 5.729999999999998e-138   NTclustered gi|1370540179|gb|CP028102.1| 469616 g163509 i0 100 463.408088235294 272 0 100 0 1 272 105831 105560 Fusobacterium mortiferum ATCC 9817 chromosome, complete genome blastn 126047 503 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium mortiferum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;