RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA928559", tax_clade = "ant, tsetse, mealybug, aphid, etc. endosymbionts" and tax_phylum = "Pseudomonadota"

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tax_superkingdom 1

tax_phylum 1

  • Pseudomonadota · 2 ✖

tax_kingdom 1

tax_clade 1

  • ant, tsetse, mealybug, aphid, etc. endosymbionts · 2 ✖

bioproject 1

  • PRJNA928559 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13656670 13656670 PRJNA928559_P_NODE_176131_length_262_cov_2.433862_g174562_i0 PRJNA928559 176131 262 2.433862 6.37671844 Candidatus Stammera capleta 2608262 Bacteria Bacteria 228 3.7e-55   NTclustered gi|2676815329|gb|CP144790.1| 2608262 g174562 i0 82.89 39.9198473282443 263 35 98 8 5 262 74796 75053 MAG: Candidatus Stammera capleta isolate JBPPEFJP chromosome blastn 10459 228 1 Bacteria ant, tsetse, mealybug, aphid, etc. endosymbionts Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Candidatus Stammera Candidatus Stammera capleta
23855719 23855719 PRJNA928559_P_NODE_208759_length_244_cov_1.573099_g207190_i0 PRJNA928559 208759 244 1.573099 3.83836156 Candidatus Mikella endobia 1778264 Bacteria Bacteria 259 1.21e-64   NTclustered gi|1011039798|emb|LN999831.1| 1778264 g207190 i0 86.122 109.733606557377 245 28 98 3 1 240 174095 173852 Enterobacteriaceae bacterium symbiont of Paracoccus marginatus isolate MEPMAR genome assembly, chromosome: I blastn 26775 259 1 Bacteria ant, tsetse, mealybug, aphid, etc. endosymbionts Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Candidatus Mikella Candidatus Mikella endobia

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;