RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA928559", tax_clade = "Metamonada" and tax_phylum = "Parabasalia"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 3 ✖

tax_clade 1

  • Metamonada · 3 ✖

bioproject 1

  • PRJNA928559 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20029247 20029247 PRJNA928559_P_NODE_154176_length_283_cov_2.542857_g152607_i0 PRJNA928559 154176 283 2.542857 7.19628531 Holomastigotes sp. 3086161 Parabasalia other_Eukaryota 78.7 4.31e-10   NTclustered gi|2637867514|gb|OR995879.1| 3086161 g152607 i0 88.889 0.420494699646643 63 7 22 0 206 268 2008 2070 Holomastigotes sp. clone Hsjo_Para28S_sq53sz61 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 119 78.7 1 Eukaryota Metamonada   Parabasalia   Spirotrichonymphida Holomastigotoididae Holomastigotes Holomastigotes sp.
26866831 26866831 PRJNA928559_P_NODE_221761_length_230_cov_4.101911_g220192_i0 PRJNA928559 221761 230 4.101911 9.4343953 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 40.8 0.0467   NR XP_001314726.1 412133 g220192 i0 42.2 0.58695652173913 45 22 58.7 1 151 17 51 91 XP_001314726.1 positive regulation of ATP-dependent microtubule motor activity, plus-end-directed [Trichomonas vaginalis G3] diamond 135 40.8 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
29456018 29456018 PRJNA928559_P_NODE_145090_length_293_cov_1.586364_g143521_i0 PRJNA928559 145090 293 1.586364 4.64804652 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 41.6 0.0458   NR XP_001314726.1 412133 g143521 i0 42.2 0.460750853242321 45 22 46.1 1 246 112 51 91 XP_001314726.1 positive regulation of ATP-dependent microtubule motor activity, plus-end-directed [Trichomonas vaginalis G3] diamond 135 41.6 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;