RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where bioproject = "PRJNA928559", tax_clade = "FCB group" and tax_phylum = "Rhodothermota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 6 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 6 ✖

bioproject 1

  • PRJNA928559 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5081409 5081409 PRJNA928559_P_NODE_3424_length_1580_cov_13.401460_g1350_i1 PRJNA928559 3424 1580 13.40146 211.743068 Rhodothermales 1853224 Bacteria Bacteria 1738 0   NTclustered gi|1167574847|gb|CP020382.1| 1779382 g1350 i1 87.615 359.16582278481 1526 154 95 29 2 1506 2905303 2906814 Rhodothermaceae bacterium RA chromosome, complete genome blastn 567482 1738 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae   Rhodothermaceae bacterium RA
6005668 6005668 PRJNA928559_P_NODE_140685_length_298_cov_1.866667_g139116_i0 PRJNA928559 140685 298 1.866667 5.56266766 Roseithermus sacchariphilus 2893045 Bacteria Bacteria 353 6.779999999999998e-93   NTclustered gi|1417721500|gb|CP030158.1| 2893045 g139116 i0 89.818 239.530201342282 275 28 92 0 1 275 1400482 1400756 Roseithermus sacchariphilus strain MEBiC09517 chromosome, complete genome blastn 71380 353 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Salisaetaceae Roseithermus Roseithermus sacchariphilus
6357038 6357038 PRJNA928559_P_NODE_216825_length_239_cov_8.512048_g215256_i0 PRJNA928559 216825 239 8.512048 20.343794720000002 Rhodothermus 29548 Bacteria Bacteria 104 5.85e-18   NTclustered gi|2844596544|gb|CP172416.1| 29549 g215256 i0 94.118 30.7489539748954 68 4 28 0 126 193 3097104 3097171 Rhodothermus marinus strain ISCAR-493 chromosome blastn 7349 104 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodothermus Rhodothermus marinus
12732448 12732448 PRJNA928559_P_NODE_225770_length_213_cov_4.828571_g224201_i0 PRJNA928559 225770 213 4.828571 10.28485623 Rubrivirga 1434037 Bacteria Bacteria 255 1.33e-63   NTclustered gi|2890853429|gb|CP177355.1| 3391575 g224201 i0 88.732 314.558685446009 213 18 99 5 4 213 805553 805344 Rubrivirga sp. IMCC43871 chromosome, complete genome blastn 67001 255 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC43871
22580529 22580529 PRJNA928559_P_NODE_203438_length_246_cov_2.416185_g201869_i0 PRJNA928559 203438 246 2.416185 5.9438151 Pseudomonadati 3379134 Bacteria Bacteria 109 1.04e-25   NR MFA8341445.1 2026787 g201869 i0 74.6 13.8048780487805 63 16 76.8 0 245 57 58 120 MFA8341445.1 aminomethyl-transferring glycine dehydrogenase [Rhodothermaceae bacterium] diamond 3396 110 0.990909090909091 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae   Rhodothermaceae bacterium
31478671 31478671 PRJNA928559_P_NODE_153716_length_284_cov_1.402844_g152147_i0 PRJNA928559 153716 284 1.402844 3.98407696 Rhodothermales bacterium 2306054 Bacteria Bacteria 90.1 2.9300000000000004e-21   NR HYE59163.1 2306054 g152147 i0 88.9 0.475352112676056 45 5 47.5 0 282 148 44 88 HYE59163.1 VOC family protein [Rhodothermales bacterium] diamond 135 90.1 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;