RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA928559" and tax_clade = "CRuMs"

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tax_superkingdom 1

tax_clade 1

  • CRuMs · 2 ✖

bioproject 1

  • PRJNA928559 · 2 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13656135 13656135 PRJNA928559_P_NODE_137451_length_302_cov_1.703057_g135882_i0 PRJNA928559 137451 302 1.703057 5.14323214 Micronuclearia podoventralis 238746 Root_unresolved Root_unresolved 165 3.46e-36   NTclustered gi|300078503|gb|GU001165.1| 238746 g135882 i0 78.8 22.5860927152318 250 44 80 7 1 243 4185 4432 Micronuclearia podoventralis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 6821 165 1 Eukaryota CRuMs       Rigifilida   Micronuclearia Micronuclearia podoventralis
23854762 23854762 PRJNA928559_P_NODE_142399_length_296_cov_1.914798_g140830_i0 PRJNA928559 142399 296 1.914798 5.66780208 Rigifila ramosa 1122280 Root_unresolved Root_unresolved 267 9.02e-67   NTclustered gi|390124887|dbj|AB686267.1| 1122280 g140830 i0 84.155 31.6013513513514 284 36 95 8 17 296 1672 1950 Rigifila ramosa gene for large subunit ribosomal RNA, partial sequence, strain: YPF923 blastn 9354 267 1 Eukaryota CRuMs       Rigifilida   Rigifila Rigifila ramosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;