RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

20 rows where bioproject = "PRJNA928559", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 20 ✖

tax_clade 1

  • Amoebozoa · 20 ✖

bioproject 1

  • PRJNA928559 · 20 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6005132 6005132 PRJNA928559_P_NODE_104145_length_349_cov_6.326087_g102576_i0 PRJNA928559 104145 349 6.326087 22.07804363 Spumochlamys bryora 675832 Tubulinea other_Eukaryota 226 1.8299999999999995e-54   NTclustered gi|259595677|gb|FJ705341.1| 675832 g102576 i0 80.312 6.35816618911175 320 46 90 16 36 349 1 309 Spumochlamys bryora clone 1901 18S ribosomal RNA gene, partial sequence blastn 2219 226 1 Eukaryota Amoebozoa   Tubulinea Corycida   Microchlamyiidae Spumochlamys Spumochlamys bryora
6005238 6005238 PRJNA928559_P_NODE_111785_length_337_cov_2.700758_g110216_i0 PRJNA928559 111785 337 2.700758 9.10155446 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 556 5.529999999999999e-154   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g110216 i0 96.439 85.4421364985163 337 12 100 0 1 337 2283 2619 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 28794 556 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
6007322 6007322 PRJNA928559_P_NODE_46505_length_498_cov_18.682353_g44943_i0 PRJNA928559 46505 498 18.682353 93.03811794 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 213 2.11e-50   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g44943 i0 83.83 40.0140562248996 235 26 62 11 238 468 4488 4262 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 19927 213 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
6356797 6356797 PRJNA928559_P_NODE_154505_length_283_cov_1.509524_g152936_i0 PRJNA928559 154505 283 1.509524 4.27195292 Lesquereusia modesta 1260108 Tubulinea other_Eukaryota 114 5.5e-29   NR AFX73094.1 1260108 g152936 i0 64.5 3.92226148409894 93 33 98.6 0 281 3 118 210 AFX73094.1 elongation factor 2 alpha, partial [Lesquereusia modesta] diamond 1110 114 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Lesquereusiidae Lesquereusia Lesquereusia modesta
7280217 7280217 PRJNA928559_P_NODE_117946_length_328_cov_1.721569_g116377_i0 PRJNA928559 117946 328 1.721569 5.64674632 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 315 3.56e-81   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g116377 i0 83.988 1.81707317073171 331 50 100 1 1 328 2605 2935 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 596 315 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
8554820 8554820 PRJNA928559_P_NODE_106047_length_346_cov_2.659341_g104478_i0 PRJNA928559 106047 346 2.659341 9.20131986 Gephyramoeba sp. ATCC50654 136454 Tubulinea other_Eukaryota 556 5.69e-154   NTclustered gi|11527304|gb|AF293897.1|AF293897 136454 g104478 i0 95.665 23.4421965317919 346 15 100 0 1 346 584 929 Gephyramoeba sp. ATCC50654 small subunit ribosomal RNA gene, complete sequence blastn 8111 556 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida   Gephyramoeba Gephyramoeba sp. ATCC50654
9832158 9832158 PRJNA928559_P_NODE_69248_length_422_cov_4.501433_g67679_i0 PRJNA928559 69248 422 4.501433 18.99604726 Pyxidicula operculata 1078852 Tubulinea other_Eukaryota 710 0   NTclustered gi|345294028|gb|JF694284.1| 1078852 g67679 i0 97.143 69.4644549763033 420 12 99 0 1 420 203 622 Pyxidicula operculata small subunit ribosomal RNA gene, partial sequence blastn 29314 710 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida   Pyxidicula Pyxidicula operculata
9832539 9832539 PRJNA928559_P_NODE_99488_length_357_cov_7.028169_g97919_i0 PRJNA928559 99488 357 7.028169 25.09056333 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 82.4 4.31e-11   NTclustered gi|909719647|gb|KT185627.1| 5778 g97919 i0 83.908 0.243697478991597 87 13 24 1 167 253 25944 26029 Vermamoeba vermiformis isolate BCP-EM3VF21-2 mitochondrion, complete genome blastn 87 82.4 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
11107276 11107276 PRJNA928559_P_NODE_225469_length_215_cov_13.577465_g223900_i0 PRJNA928559 225469 215 13.577465 29.19154975 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 313 7.879999999999998e-81   NTclustered gi|300078496|gb|GU001158.1| 5778 g223900 i0 100 75.1488372093023 169 0 79 0 1 169 18 186 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 16157 313 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
12732102 12732102 PRJNA928559_P_NODE_129430_length_312_cov_1.899582_g127861_i0 PRJNA928559 129430 312 1.899582 5.92669584 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 166 2.82e-46   NR YP_003540812.1 5778 g127861 i0 97.7 0.836538461538462 87 2 83.7 0 263 3 101 187 YP_003540812.1 ATP synthase F1 subunit alpha [Vermamoeba vermiformis] diamond 261 166 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
14930000 14930000 PRJNA928559_P_NODE_113272_length_335_cov_1.786260_g111703_i0 PRJNA928559 113272 335 1.78626 5.983971 Spumochlamys bryora 675832 Tubulinea other_Eukaryota 202 2.96e-47   NTclustered gi|259595677|gb|FJ705341.1| 675832 g111703 i0 78.947 19.8507462686567 342 38 100 22 1 335 2147 1833 Spumochlamys bryora clone 1901 18S ribosomal RNA gene, partial sequence blastn 6650 202 1 Eukaryota Amoebozoa   Tubulinea Corycida   Microchlamyiidae Spumochlamys Spumochlamys bryora
16206868 16206868 PRJNA928559_P_NODE_34173_length_564_cov_10.847251_g32627_i0 PRJNA928559 34173 564 10.847251 61.17849564 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 582 1.5899999999999999e-161   NTclustered gi|909719645|gb|KT185625.1| 5778 g32627 i0 85.891 1.00531914893617 567 57 100 17 1 564 759 213 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 567 582 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
17480484 17480484 PRJNA928559_P_NODE_134594_length_305_cov_4.150862_g133025_i0 PRJNA928559 134594 305 4.150862 12.6601291 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 409 1.46e-109   NTclustered gi|909719645|gb|KT185625.1| 5778 g133025 i0 90.909 27.744262295082 308 23 100 5 1 305 769 1074 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 8462 409 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
17482515 17482515 PRJNA928559_P_NODE_66754_length_429_cov_2.410112_g65185_i0 PRJNA928559 66754 429 2.410112 10.33938048 Spumochlamys bryora 675832 Tubulinea other_Eukaryota 472 2.68e-128   NTclustered gi|259595677|gb|FJ705341.1| 675832 g65185 i0 98.502 56.8205128205128 267 4 62 0 1 267 1320 1586 Spumochlamys bryora clone 1901 18S ribosomal RNA gene, partial sequence blastn 24376 472 1 Eukaryota Amoebozoa   Tubulinea Corycida   Microchlamyiidae Spumochlamys Spumochlamys bryora
20030534 20030534 PRJNA928559_P_NODE_38916_length_535_cov_9.547619_g37361_i0 PRJNA928559 38916 535 9.547619 51.07976165 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 802 0   NTclustered gi|292559443|ref|NC_013986.1| 5778 g37361 i0 94.14 11.8654205607477 529 27 98 4 1 526 26423 26950 Hartmannella vermiformis mitochondrion, complete genome blastn 6348 802 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
23856182 23856182 PRJNA928559_P_NODE_32899_length_573_cov_109.248000_g31365_i0 PRJNA928559 32899 573 109.248 625.99104 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 1031 0   NTclustered gi|300078496|gb|GU001158.1| 5778 g31365 i0 99.127 19.6666666666667 573 5 100 0 1 573 1784 1212 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 11269 1031 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
24204266 24204266 PRJNA928559_P_NODE_144579_length_293_cov_22.545455_g143010_i0 PRJNA928559 144579 293 22.545455 66.05818315 Vermamoeba 1260114 Tubulinea other_Eukaryota 542 1.32e-149   NTclustered gi|2806326577|gb|PQ345827.1| 5778 g143010 i0 100 100 293 0 100 0 1 293 75 367 Vermamoeba vermiformis isolate 8FSa small subunit ribosomal RNA gene, partial sequence blastn 29300 542 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
25128981 25128981 PRJNA928559_P_NODE_169580_length_268_cov_2.348718_g168011_i0 PRJNA928559 169580 268 2.348718 6.29456424 Gephyramoeba sp. ATCC50654 136454 Tubulinea other_Eukaryota 440 4.479999999999998e-119   NTclustered gi|11527304|gb|AF293897.1|AF293897 136454 g168011 i0 96.269 97.1044776119403 268 10 100 0 1 268 74 341 Gephyramoeba sp. ATCC50654 small subunit ribosomal RNA gene, complete sequence blastn 26024 440 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida   Gephyramoeba Gephyramoeba sp. ATCC50654
25129772 25129772 PRJNA928559_P_NODE_221140_length_231_cov_8.050633_g219571_i0 PRJNA928559 221140 231 8.050633 18.59696223 Spumochlamys bryora 675832 Tubulinea other_Eukaryota 351 1.8199999999999998e-92   NTclustered gi|259595677|gb|FJ705341.1| 675832 g219571 i0 98.98 11.8398268398268 196 2 85 0 36 231 1 196 Spumochlamys bryora clone 1901 18S ribosomal RNA gene, partial sequence blastn 2735 351 1 Eukaryota Amoebozoa   Tubulinea Corycida   Microchlamyiidae Spumochlamys Spumochlamys bryora
25130074 25130074 PRJNA928559_P_NODE_36020_length_552_cov_15.083507_g34470_i0 PRJNA928559 36020 552 15.083507000000001 83.26095864 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 835 0   NTclustered gi|292559443|ref|NC_013986.1| 5778 g34470 i0 94.815 61.6195652173913 540 21 97 6 1 538 20590 20056 Hartmannella vermiformis mitochondrion, complete genome blastn 34014 835 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;