RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA927284" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA927284 · 7 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2177238 2177238 PRJNA927284_P_NODE_8382_length_167_cov_2.115942_g8175_i0 PRJNA927284 8382 167 2.115942 3.53362314 Naegleria australiensis 51634 Heterolobosea other_Eukaryota 309 7.53e-80   NTclustered gi|2476253407|gb|OQ627480.1| 51634 g8175 i0 100 64.1796407185629 167 0 100 0 1 167 2343 2509 Naegleria australiensis strain PP397 rDNA-containing extrachromosomal element genomic sequence; small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence; and non-ribosomal sequence blastn 10718 309 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria australiensis
6005047 6005047 PRJNA927284_P_NODE_6225_length_215_cov_1.575269_g6018_i0 PRJNA927284 6225 215 1.575269 3.38682835 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 337 4.67e-88   NTclustered gi|290988433|ref|XM_002676880.1| 5762 g6018 i0 94.884 25.0186046511628 215 11 100 0 1 215 1140 1354 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_82621), mRNA blastn 5379 337 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
7630686 7630686 PRJNA927284_P_NODE_6226_length_215_cov_1.456989_g6019_i0 PRJNA927284 6226 215 1.456989 3.13252635 Naegleria 5761 Heterolobosea other_Eukaryota 398 2.1099999999999997e-106   NTclustered gi|2618963742|gb|OR769034.1| 5762 g6019 i0 100 37.0139534883721 215 0 100 0 1 215 5315 5101 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 7958 398 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
11105476 11105476 PRJNA927284_P_NODE_8629_length_163_cov_1.582090_g8422_i0 PRJNA927284 8629 163 1.58209 2.5788067 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 154 3.62e-33   NTclustered gi|290981449|ref|XM_002673397.1| 5762 g8422 i0 86.957 33.638036809816 138 16 84 2 2 138 357 493 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_55855), mRNA blastn 5483 154 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
20028501 20028501 PRJNA927284_P_NODE_776_length_896_cov_4.152249_g661_i0 PRJNA927284 776 896 4.152249 37.20415104 Naegleria australiensis 51634 Heterolobosea other_Eukaryota 1650 0   NTclustered gi|32479131|gb|AY321362.1| 51634 g661 i0 99.888 94.2488839285714 896 1 100 0 1 896 435 1330 Naegleria australiensis isolate TT 18S ribosomal RNA gene, partial sequence blastn 84447 1650 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria australiensis
22579035 22579035 PRJNA927284_P_NODE_8618_length_163_cov_1.768657_g8411_i0 PRJNA927284 8618 163 1.768657 2.88291091 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 265 1.6e-66   NTclustered gi|290975864|ref|XM_002670616.1| 5762 g8411 i0 96.296 15.9877300613497 162 4 99 2 1 161 522 362 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_55913), mRNA blastn 2606 265 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
22930329 22930329 PRJNA927284_P_NODE_2258_length_462_cov_3.191686_g2066_i0 PRJNA927284 2258 462 3.191686 14.74558932 Naegleria 5761 Heterolobosea other_Eukaryota 852 0   NTclustered gi|32479131|gb|AY321362.1| 51634 g2066 i0 100 97.8484848484848 461 0 99 0 1 461 1353 1813 Naegleria australiensis isolate TT 18S ribosomal RNA gene, partial sequence blastn 45206 852 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria australiensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;