RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA927284" and tax_phylum = "Apicomplexa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA927284 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10181231 10181231 PRJNA927284_P_NODE_5628_length_233_cov_2.323529_g5421_i0 PRJNA927284 5628 233 2.323529 5.41382257 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 200 7.039999999999998e-47   NTclustered gi|400365273|gb|JQ684658.1| 5833 g5421 i0 88.166 75.3948497854077 169 18 72 2 1 168 2567 2734 Plasmodium falciparum isolate LF2 28S ribosomal RNA gene, partial sequence blastn 17567 202 0.99009900990099 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
25127967 25127967 PRJNA927284_P_NODE_2120_length_482_cov_8.108168_g1930_i0 PRJNA927284 2120 482 8.108168 39.08136976 Plasmodium falciparum 5833 SAR_Eukaryotes SAR_Eukaryotes 108 9.88e-19   NTclustered gi|1162436928|ref|XR_002273099.1| 36329 g1930 i0 76.699 14.2385892116183 206 40 42 7 1 202 3493 3694 Plasmodium falciparum 3D7 28S ribosomal RNA (PF3D7_0112700), rRNA blastn 6863 108 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
32276747 32276747 PRJNA927284_P_NODE_5818_length_227_cov_1.732323_g5611_i0 PRJNA927284 5818 227 1.732323 3.93237321 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 85.9 1.23e-18   NR XP_012336428.1 5857 g5611 i0 59.3 12.8986784140969 81 25 96.5 1 222 4 29 109 XP_012336428.1 uncharacterized protein AK88_03388 [Plasmodium fragile] diamond 2928 86.3 0.995365005793743 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium fragile

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;