RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA927284", tax_phylum = "Acidobacteriota" and tax_superkingdom = "Bacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Bacteria · 4 ✖

tax_phylum 1

  • Acidobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA927284 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3452758 3452758 PRJNA927284_P_NODE_7003_length_193_cov_26.000000_g6796_i0 PRJNA927284 7003 193 26 50.18 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 302 1.5e-77   NTclustered gi|217038907|gb|EU810998.1| 171953 g6796 i0 94.845 219.471502590674 194 8 100 2 1 193 134 326 Uncultured Acidobacteria bacterium clone 01QCK 23S ribosomal RNA gene, partial sequence blastn 42358 302 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
6005038 6005038 PRJNA927284_P_NODE_4965_length_259_cov_2.430435_g4758_i0 PRJNA927284 4965 259 2.430435 6.29482665 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 337 5.82e-88   NTclustered gi|2874253885|emb|OY970060.1| 171953 g4758 i0 90.038 134.416988416988 261 24 100 1 1 259 4840521 4840781 MAG: uncultured Acidobacteriota bacterium isolate MFD01916.bin.c.4 genome assembly, chromosome: 1 blastn 34814 337 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
26676254 26676254 PRJNA927284_P_NODE_461_length_1178_cov_3.141862_g376_i0 PRJNA927284 461 1178 3.141862 37.01113436 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 178 2.3399999999999998e-46   NR HSE15878.1 2283092 g376 i0 48.2 1.16638370118846 218 96 53.5 5 945 316 107 315 HSE15878.1 matrixin family metalloprotease [Pyrinomonadaceae bacterium] diamond 1374 178 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
28509174 28509174 PRJNA927284_P_NODE_687_length_953_cov_2.990260_g376_i1 PRJNA927284 687 953 2.99026 28.4971778 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 178 2.859999999999999e-47   NR HSE15878.1 2283092 g376 i1 48.2 1.44176285414481 218 96 66.1 5 720 91 107 315 HSE15878.1 matrixin family metalloprotease [Pyrinomonadaceae bacterium] diamond 1374 178 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;