RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA927284", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA927284 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27853192 27853192 PRJNA927284_P_NODE_3784_length_322_cov_2.197952_g3578_i0 PRJNA927284 3784 322 2.197952 7.07740544 Myxococcales 29 Bacteria Bacteria 80.9 3.41e-15   NR MET0406658.1 1965334 g3578 i0 48 4.13664596273292 98 35 85.7 3 21 296 184 271 MET0406658.1 matrixin family metalloprotease [Cystobacter sp.] diamond 1332 81.3 0.995079950799508 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Cystobacter Cystobacter sp.
30758702 30758702 PRJNA927284_P_NODE_3594_length_336_cov_1.840391_g3389_i0 PRJNA927284 3594 336 1.840391 6.18371376 Pseudomonadati 3379134 Bacteria Bacteria 78.6 2.88e-14   NR HEY0840344.1 1971226 g3389 i0 72 9.46428571428571 50 14 44.6 0 334 185 556 605 HEY0840344.1 M2 family metallopeptidase [Vulgatibacter sp.] diamond 3180 78.6 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Vulgatibacteraceae Vulgatibacter Vulgatibacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;