RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA927284" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 6 ✖

bioproject 1

  • PRJNA927284 · 6 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10181225 10181225 PRJNA927284_P_NODE_408_length_1271_cov_13.372786_g108_i4 PRJNA927284 408 1271 13.372786 169.96811006 Cetobacterium 180162 Bacteria Bacteria 1109 0   NTclustered gi|2201062197|gb|CP092519.1| 188913 g108 i4 83.983 395.808025177026 1205 141 93 44 1 1186 48881 50052 Cetobacterium somerae strain CS2105-BJ chromosome, complete genome blastn 503072 1109 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
10181229 10181229 PRJNA927284_P_NODE_528_length_1102_cov_21.178938_g436_i0 PRJNA927284 528 1102 21.178938 233.39189676 Cetobacterium 180162 Bacteria Bacteria 1991 0   NTclustered gi|2865368125|gb|CP122294.1| 188913 g436 i0 99.274 497.342105263158 1102 8 100 0 1 1102 279823 278722 Cetobacterium somerae strain MSU41 plasmid p41_t2, complete sequence blastn 548071 1991 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
10181236 10181236 PRJNA927284_P_NODE_7868_length_176_cov_126.748299_g7661_i0 PRJNA927284 7868 176 126.748299 223.07700624 Cetobacterium 180162 Bacteria Bacteria 320 3.69e-83   NTclustered gi|2865368125|gb|CP122294.1| 188913 g7661 i0 99.432 499.511363636364 176 1 100 0 1 176 278554 278379 Cetobacterium somerae strain MSU41 plasmid p41_t2, complete sequence blastn 87914 320 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
14929784 14929784 PRJNA927284_P_NODE_392_length_1294_cov_13.378656_g108_i3 PRJNA927284 392 1294 13.378656 173.11980864 Cetobacterium somerae 188913 Bacteria Bacteria 1094 0   NTclustered gi|2201062197|gb|CP092519.1| 188913 g108 i3 84.139 338.64914992272 1179 136 90 43 1 1161 48881 50026 Cetobacterium somerae strain CS2105-BJ chromosome, complete genome blastn 438212 1094 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
16555057 16555057 PRJNA927284_P_NODE_373_length_1320_cov_13.049574_g108_i2 PRJNA927284 373 1320 13.049574 172.2543768 Cetobacterium 180162 Bacteria Bacteria 1105 0   NTclustered gi|2201062197|gb|CP092519.1| 188913 g108 i2 84.188 404.165909090909 1189 135 89 45 1 1170 48881 50035 Cetobacterium somerae strain CS2105-BJ chromosome, complete genome blastn 533499 1105 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
24204103 24204103 PRJNA927284_P_NODE_4719_length_271_cov_28.243802_g4512_i0 PRJNA927284 4719 271 28.243802 76.54070342 Cetobacterium 180162 Bacteria Bacteria 433 7.6e-117   NTclustered gi|2865368125|gb|CP122294.1| 188913 g4512 i0 99.167 528.940959409594 240 2 89 0 32 271 280531 280770 Cetobacterium somerae strain MSU41 plasmid p41_t2, complete sequence blastn 143343 433 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;