RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA927284" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 2 ✖

bioproject 1

  • PRJNA927284 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26778840 26778840 PRJNA927284_P_NODE_4161_length_300_cov_3.177122_g3954_i0 PRJNA927284 4161 300 3.177122 9.531366 root 1 Root_unresolved Root_unresolved 67.4 1.56e-10   NR KAI8467507.1 39955 g3954 i0 61.2 4.25 49 18 48 1 257 114 417 465 KAI8467507.1 MAG: hypothetical protein J3K34DRAFT_34076 [Monoraphidium minutum] diamond 1275 67.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium minutum
31826212 31826212 PRJNA927284_P_NODE_6117_length_218_cov_1.555556_g5910_i0 PRJNA927284 6117 218 1.555556 3.39111208 Monoraphidium minutum 39955 Plants Plants 73.9 2.7e-13   NR KAI8465156.1 39955 g5910 i0 47.9 1.92660550458716 71 25 81.2 1 216 40 118 188 KAI8465156.1 MAG: hypothetical protein J3K34DRAFT_94001 [Monoraphidium minutum] diamond 420 73.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium minutum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;