RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA924320" and tax_phylum = "Foraminifera"

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tax_superkingdom 1

tax_phylum 1

  • Foraminifera · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA924320 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25125274 25125274 PRJNA924320_S_NODE_36700_length_184_cov_1.066667_g36558_i0 PRJNA924320 36700 184 1.066667 1.96266728 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 96.3 2.4e-21   NR ETO10415.1 46433 g36558 i0 73.3 10.4673913043478 60 16 97.8 0 1 180 578 637 ETO10415.1 inorganic pyrophosphatase [Reticulomyxa filosa] diamond 1926 96.3 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
28603835 28603835 PRJNA924320_S_NODE_48567_length_166_cov_0.871795_g48425_i0 PRJNA924320 48567 166 0.871795 1.4471797 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 44.3 0.00377   NR ETO15304.1 46433 g48425 i0 50 0.614457831325301 34 17 61.4 0 165 64 114 147 ETO15304.1 hypothetical protein RFI_22059 [Reticulomyxa filosa] diamond 102 44.3 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
29337270 29337270 PRJNA924320_S_NODE_46369_length_167_cov_0.864407_g46227_i0 PRJNA924320 46369 167 0.864407 1.44355969 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 71.6 8.53e-13   NR ETO04378.1 46433 g46227 i0 50.9 1.90419161676647 55 25 98.8 1 1 165 43 95 ETO04378.1 hypothetical protein RFI_33019 [Reticulomyxa filosa] diamond 318 71.6 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;