RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA924320", tax_kingdom = "Fusobacteriati" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 4 ✖

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 4 ✖

bioproject 1

  • PRJNA924320 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6356285 6356285 PRJNA924320_S_NODE_8845_length_327_cov_3.428058_g8703_i0 PRJNA924320 8845 327 3.428058 11.20974966 Cetobacterium 180162 Bacteria Bacteria 603 6.769999999999999e-168   NTclustered gi|2865368125|gb|CP122294.1| 188913 g8703 i0 100 409.296636085627 326 0 99 0 2 327 278210 277885 Cetobacterium somerae strain MSU41 plasmid p41_t2, complete sequence blastn 133840 603 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
30411434 30411434 PRJNA924320_S_NODE_24493_length_215_cov_0.921687_g24351_i0 PRJNA924320 24493 215 0.921687 1.98162705 Fusobacterium 848 Bacteria Bacteria 58.2 9.38e-8   NR WP_005958302.1 859 g24351 i0 40.6 2.88837209302326 69 40 96.3 1 215 9 100 167 WP_005958302.1 DNA helicase RecQ [Fusobacterium necrophorum] diamond 621 58.2 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium necrophorum
32174569 32174569 PRJNA924320_S_NODE_3138_length_525_cov_1.714286_g2998_i0 PRJNA924320 3138 525 1.714286 9.0000015 Streptobacillus canis 2678686 Bacteria Bacteria 47.8 0.0102   NR WP_156299150.1 2678686 g2998 i0 31.7 0.594285714285714 104 65 58.9 3 508 200 862 960 WP_156299150.1 autotransporter domain-containing protein [Streptobacillus canis] diamond 312 47.8 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Streptobacillus Streptobacillus canis
32900338 32900338 PRJNA924320_S_NODE_44440_length_169_cov_1.700000_g44298_i0 PRJNA924320 44440 169 1.7 2.873 Ilyobacter sp. 3100343 Bacteria Bacteria 44.3 0.00232   NR WP_372712900.1 3100343 g44298 i0 39.6 0.85207100591716 48 29 85.2 0 24 167 32 79 WP_372712900.1 Crp/Fnr family transcriptional regulator [Ilyobacter sp.] diamond 144 44.3 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Ilyobacter Ilyobacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;