RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA924320", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 8 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 8 ✖

bioproject 1

  • PRJNA924320 · 8 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9827232 9827232 PRJNA924320_S_NODE_708_length_1019_cov_8.151546_g644_i0 PRJNA924320 708 1019 8.151546 83.06425374 Simkania sp. 34094 Bacteria Bacteria 281 8.01e-91   NR MCB1084310.1 34094 g644 i0 69.9 0.577036310107949 196 59 57.7 0 757 170 1 196 MCB1084310.1 hypothetical protein [Simkania sp.] diamond 588 281 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae Simkania Simkania sp.
26707858 26707858 PRJNA924320_S_NODE_48401_length_166_cov_0.871795_g48259_i0 PRJNA924320 48401 166 0.871795 1.4471797 Chlamydiia bacterium 2052156 Bacteria Bacteria 42 0.024   NR MCH9621607.1 2052156 g48259 i0 47.4 0.686746987951807 38 20 68.7 0 1 114 114 151 MCH9621607.1 hypothetical protein [Chlamydiia bacterium] diamond 114 42 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia       Chlamydiia bacterium
28287854 28287854 PRJNA924320_S_NODE_3986_length_471_cov_2.080569_g3845_i0 PRJNA924320 3986 471 2.080569 9.79947999 Candidatus Neptunochlamydia sp. REUL1 3064277 Bacteria Bacteria 61.2 1.06e-7   NR WP_316357043.1 3064277 g3845 i0 50 0.707006369426752 48 24 30.6 0 309 166 199 246 WP_316357043.1 ubiquitin-like protein [Candidatus Neptunochlamydia sp. REUL1] diamond 333 61.2 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae Candidatus Neptunichlamydia Candidatus Neptunichlamydia sp. REUL1
30656594 30656594 PRJNA924320_S_NODE_8673_length_330_cov_2.359431_g8531_i0 PRJNA924320 8673 330 2.359431 7.7861223 Simkania sp. 34094 Bacteria Bacteria 59.3 1.13e-8   NR MCB1084226.1 34094 g8531 i0 58.9 0.509090909090909 56 23 50.9 0 330 163 53 108 MCB1084226.1 hypothetical protein [Simkania sp.] diamond 168 59.3 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae Simkania Simkania sp.
31067550 31067550 PRJNA924320_S_NODE_37655_length_182_cov_1.135338_g37513_i0 PRJNA924320 37655 182 1.135338 2.06631516 Chlamydiales bacterium 2047757 Bacteria Bacteria 85.5 5.63e-20   NR MCP5470419.1 2047757 g37513 i0 67.2 0.956043956043956 58 19 95.6 0 179 6 26 83 MCP5470419.1 dynein light chain family protein [Chlamydiales bacterium] diamond 174 85.5 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
31794500 31794500 PRJNA924320_S_NODE_7997_length_342_cov_3.218430_g7855_i0 PRJNA924320 7997 342 3.21843 11.0070306 Chlamydiales bacterium 2047757 Bacteria Bacteria 189 3.6400000000000003e-59   NR MCP5470420.1 2047757 g7855 i0 82.1 0.982456140350877 112 20 98.2 0 341 6 4 115 MCP5470420.1 ribosomal protein L24e family protein [Chlamydiales bacterium] diamond 336 189 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
31794501 31794501 PRJNA924320_S_NODE_8637_length_331_cov_1.407801_g8495_i0 PRJNA924320 8637 331 1.407801 4.65982131 Parachlamydia sp. AcF125 2795736 Bacteria Bacteria 60.8 4.52e-8   NR WP_213157390.1 2795736 g8495 i0 43.6 1.50453172205438 78 43 69.8 1 296 66 388 465 WP_213157390.1 ankyrin repeat domain-containing protein [Parachlamydia sp. AcF125] diamond 498 60.8 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia sp. AcF125
32585815 32585815 PRJNA924320_S_NODE_4839_length_429_cov_4.650000_g4698_i0 PRJNA924320 4839 429 4.65 19.9485 Chlamydiales bacterium 2047757 Bacteria Bacteria 112 1.82e-28   NR MCP5470420.1 2047757 g4698 i0 80 0.454545454545455 65 13 45.5 0 428 234 15 79 MCP5470420.1 ribosomal protein L24e family protein [Chlamydiales bacterium] diamond 195 112 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;