RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA924320", tax_clade = "FCB group" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA924320 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27656736 27656736 PRJNA924320_S_NODE_30584_length_197_cov_1.635135_g30442_i0 PRJNA924320 30584 197 1.635135 3.22121595 Rhodothermales bacterium 2306054 Bacteria Bacteria 52.4 7.95e-6   NR MFT5516427.1 2306054 g30442 i0 60 1.87309644670051 40 16 60.9 0 77 196 7 46 MFT5516427.1 alanine-glyoxylate transaminase/(R)-3-amino-2-methylpropionate-pyruvate transaminase [Rhodothermales bacterium] diamond 369 52.4 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium
27720174 27720174 PRJNA924320_S_NODE_42324_length_173_cov_1.233871_g42182_i0 PRJNA924320 42324 173 1.233871 2.13459683 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 91.3 8.13e-20   NR HEX9953485.1 2838334 g42182 i0 71.4 0.971098265895954 56 16 97.1 0 3 170 170 225 HEX9953485.1 fumarylacetoacetase [Rubricoccaceae bacterium] diamond 168 91.3 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium
31067532 31067532 PRJNA924320_S_NODE_22375_length_222_cov_1.433526_g22233_i0 PRJNA924320 22375 222 1.433526 3.18242772 Salinivenus sp. 1885341 Bacteria Bacteria 48.1 2.62e-4   NR MFP4228735.1 1885341 g22233 i0 44.8 1.7972972972973 67 29 89.2 2 198 1 33 92 MFP4228735.1 deoxynucleoside kinase [Salinivenus sp.] diamond 399 48.1 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Salinibacteraceae Salinivenus Salinivenus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;