RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA924320", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 8 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 8 ✖

bioproject 1

  • PRJNA924320 · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22576099 22576099 PRJNA924320_S_NODE_14398_length_265_cov_1.157407_g14256_i0 PRJNA924320 14398 265 1.157407 3.06712855 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 69.4 2.4e-7   NTclustered gi|2107779373|gb|CP070829.1| 2448054 g14256 i0 92 1.44528301886792 50 2 18 2 198 246 2472501 2472549 MAG: Gemmatimonadales bacterium isolate bin109 chromosome blastn 383 69.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
27568997 27568997 PRJNA924320_S_NODE_36124_length_185_cov_1.125000_g35982_i0 PRJNA924320 36124 185 1.125 2.08125 Bacteria 2 Bacteria Bacteria 66.2 8.24e-11   NR MFN8573350.1 2026741 g35982 i0 50.9 24.1621621621622 55 27 89.2 0 184 20 25 79 MFN8573350.1 DnaJ C-terminal domain-containing protein [Gemmatimonadaceae bacterium] diamond 4470 66.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
28035575 28035575 PRJNA924320_S_NODE_55705_length_162_cov_0.902655_g55563_i0 PRJNA924320 55705 162 0.902655 1.4623011 Roseisolibacter agri 2014610 Bacteria Bacteria 52 6.62e-6   NR WP_284349948.1 2014610 g55563 i0 47.1 1.83333333333333 51 27 94.4 0 155 3 584 634 WP_284349948.1 Ig-like domain-containing protein [Roseisolibacter agri] diamond 297 52 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Roseisolibacter Roseisolibacter agri
28516381 28516381 PRJNA924320_S_NODE_50887_length_164_cov_1.773913_g50745_i0 PRJNA924320 50887 164 1.773913 2.90921732 Pseudomonadati 3379134 Bacteria Bacteria 42.4 0.0176   NR HUP19325.1 2026742 g50745 i0 45.9 2.10365853658537 37 20 67.7 0 164 54 17 53 HUP19325.1 HD domain-containing phosphohydrolase [Gemmatimonadota bacterium] diamond 345 42.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
28667075 28667075 PRJNA924320_S_NODE_50987_length_164_cov_1.504348_g50845_i0 PRJNA924320 50987 164 1.504348 2.46713072 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 85.5 2.5e-19   NR MEP6589946.1 2026742 g50845 i0 64.2 9.82317073170732 53 19 97 0 2 160 89 141 MEP6589946.1 glutathione peroxidase [Gemmatimonadota bacterium] diamond 1611 85.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
29961521 29961521 PRJNA924320_S_NODE_54671_length_162_cov_1.353982_g54529_i0 PRJNA924320 54671 162 1.353982 2.19345084 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 46.6 5.32e-4   NR PYP65422.1 2026742 g54529 i0 53.2 0.87037037037037 47 18 79.6 1 161 33 338 384 PYP65422.1 MAG: hypothetical protein DMD36_19425 [Gemmatimonadota bacterium] diamond 141 46.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
31320152 31320152 PRJNA924320_S_NODE_13455_length_272_cov_1.645740_g13313_i0 PRJNA924320 13455 272 1.64574 4.4764128 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 77.8 1.32e-14   NR MBX9927993.1 2026741 g13313 i0 52.8 0.794117647058823 72 34 79.4 0 270 55 244 315 MBX9927993.1 cation diffusion facilitator family transporter [Gemmatimonadaceae bacterium] diamond 216 77.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
32844677 32844677 PRJNA924320_S_NODE_48500_length_166_cov_0.871795_g48358_i0 PRJNA924320 48500 166 0.871795 1.4471797 Bacteria 2 Bacteria Bacteria 90.9 3.04e-21   NR MBA2708724.1 2026741 g48358 i0 75.9 3.93975903614458 54 13 97.6 0 165 4 32 85 MBA2708724.1 recombinase family protein [Gemmatimonadaceae bacterium] diamond 654 90.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;