RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA924320", tax_clade = "FCB group" and tax_phylum = "Fibrobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA924320 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28730130 28730130 PRJNA924320_S_NODE_6627_length_371_cov_3.484472_g6485_i0 PRJNA924320 6627 371 3.484472 12.92739112 Chitinispirillaceae bacterium 2813024 Bacteria Bacteria 45.4 0.0159   NR MFP4415963.1 2813024 g6485 i0 31.8 0.711590296495957 88 53 65.5 2 315 73 277 364 MFP4415963.1 aminopeptidase [Chitinispirillaceae bacterium] diamond 264 45.4 1 Bacteria FCB group Pseudomonadati Fibrobacterota Chitinispirillia Chitinispirillales Chitinispirillaceae   Chitinispirillaceae bacterium
29652605 29652605 PRJNA924320_S_NODE_5450_length_407_cov_1.709497_g5308_i0 PRJNA924320 5450 407 1.709497 6.95765279 root 1 Root_unresolved Root_unresolved 69.7 7.2e-11   NR WP_173473769.1 833 g5308 i0 36.1 4.93120393120393 97 56 70.8 3 3 290 208 299 WP_173473769.1 DUF4419 domain-containing protein [Fibrobacter succinogenes] diamond 2007 70.1 0.994293865905849 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter succinogenes
29803487 29803487 PRJNA924320_S_NODE_16071_length_253_cov_1.421569_g15929_i0 PRJNA924320 16071 253 1.421569 3.59656957 Fibrobacterota bacterium 2052160 Bacteria Bacteria 44.3 0.0117   NR QQS03643.1 2052160 g15929 i0 37.7 0.818181818181818 69 36 80.6 2 7 210 319 381 QQS03643.1 MAG: PEGA domain-containing protein [Fibrobacterota bacterium] diamond 207 44.3 1 Bacteria FCB group Pseudomonadati Fibrobacterota         Fibrobacterota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;