RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA922890" and tax_phylum = "Pisuviricota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Pisuviricota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA922890 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1251877 1251877 PRJNA922890_P_NODE_1_length_9820_cov_28.390114_g0_i0 PRJNA922890 1 9820 28.390114 2787.9091948 Potyvirus 12195 Viruses Viruses 18135 0   NTclustered gi|56407093|ref|NC_002509.2| 12230 g0 i0 100 99.8004073319756 9820 0 100 0 1 9820 9834 15 Turnip mosaic virus, complete genome blastn 980040 18135 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Potyvirus Potyvirus rapae
4727065 4727065 PRJNA922890_P_NODE_71384_length_234_cov_0.884848_g70974_i0 PRJNA922890 71384 234 0.884848 2.07054432 Alphacoronavirus porci 3433789 Viruses Viruses 427 2.9799999999999993e-115   NTclustered gi|1647267686|gb|MH726368.1| 28295 g70974 i0 99.573 100 234 1 100 0 1 234 8339 8572 Porcine epidemic diarrhea virus isolate GDS22, complete genome blastn 23400 427 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Alphacoronavirus Alphacoronavirus porci
6356009 6356009 PRJNA922890_P_NODE_45665_length_288_cov_1.406393_g45255_i0 PRJNA922890 45665 288 1.406393 4.05041184 root 1 Root_unresolved Root_unresolved 527 3.63e-145   NTclustered gi|9790340|ref|NC_001555.1| 12227 g45255 i0 99.653 52.9166666666667 288 1 100 0 1 288 6789 6502 Tobacco etch virus, complete genome blastn 15240 527 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Potyvirus Potyvirus nicotianainsculpentis
14005879 14005879 PRJNA922890_P_NODE_11931_length_555_cov_2.419753_g11525_i0 PRJNA922890 11931 555 2.419753 13.42962915 Betacoronavirus 694002 Viruses Viruses 968 0   NTclustered gi|2708442426|gb|PP526174.1| 11138 g11525 i0 98.195 86.4378378378378 554 10 99 0 2 555 31499 30946 Murine hepatitis virus strain JHM, complete genome blastn 47973 968 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus muris
20025384 20025384 PRJNA922890_P_NODE_77856_length_231_cov_0.888889_g77446_i0 PRJNA922890 77856 231 0.888889 2.05333359 Cardiovirus rueckerti 3427730 Viruses Viruses 427 2.9399999999999998e-115   NTclustered gi|570932740|gb|KF836390.1| 12104 g77446 i0 100 100 231 0 100 0 1 231 434 664 Encephalomyocarditis virus isolate YY13, complete genome blastn 23100 427 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae Cardiovirus Cardiovirus rueckerti
29898427 29898427 PRJNA922890_P_NODE_80171_length_230_cov_0.888199_g79761_i0 PRJNA922890 80171 230 0.888199 2.0428577 Murine astrovirus 1141625 Viruses Viruses 139 2.3600000000000002e-36   NR QBQ83077.1 1141625 g79761 i0 90.8 0.991304347826087 76 7 99.1 0 2 229 284 359 QBQ83077.1 capsid protein [Murine astrovirus] diamond 228 139 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Stellavirales Astroviridae   Murine astrovirus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;