RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA922890" and tax_phylum = "Fusobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Fusobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA922890 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5080230 5080230 PRJNA922890_P_NODE_28704_length_356_cov_0.989547_g28294_i0 PRJNA922890 28704 356 0.989547 3.52278732 Fusobacterium 848 Bacteria Bacteria 652 0   NTclustered gi|2705020071|gb|CP084132.1| 851 g28294 i0 99.719 482.705056179775 356 1 100 0 1 356 108024 107669 Fusobacterium nucleatum strain KCOM3713 chromosome, complete genome blastn 171843 652 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
16201345 16201345 PRJNA922890_P_NODE_62273_length_247_cov_1.112360_g61863_i0 PRJNA922890 62273 247 1.11236 2.7475292 Leptotrichia sp. SK-5 3075818 Bacteria Bacteria 52.8 0.022   NTclustered gi|2899356158|dbj|AP028931.1| 3075818 g61863 i0 94.118 0.137651821862348 34 2 14 0 200 233 1247371 1247404 Leptotrichia sp. SK-5 DNA, complete genome blastn 34 52.8 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. SK-5

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;