RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA922890" and tax_kingdom = "Pararnavirae"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 2 ✖

bioproject 1

  • PRJNA922890 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16201777 16201777 PRJNA922890_P_NODE_84753_length_217_cov_2.547297_g84343_i0 PRJNA922890 84753 217 2.547297 5.52763449 Gammaretrovirus murleu 3428959 Viruses Viruses 401 1.6499999999999994e-107   NTclustered gi|1167936820|gb|KY574514.1| 11786 g84343 i0 100 119.447004608295 217 0 100 0 1 217 7999 7783 Murine leukemia virus isolate CB208, complete genome blastn 25920 401 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
30214125 30214125 PRJNA922890_P_NODE_28112_length_360_cov_0.914089_g27702_i0 PRJNA922890 28112 360 0.914089 3.2907204 Megaderma lyra retrovirus 1200308 Viruses Viruses 184 7.2e-52   NR AFM52260.1 1200308 g27702 i0 73.1 0.991666666666667 119 32 99.2 0 358 2 553 671 AFM52260.1 Pol, partial [Megaderma lyra retrovirus] diamond 357 184 1 Viruses Mammalian gammaretrovirus group Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Bat gammaretrovirus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;