RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA922890", tax_kingdom = "Metazoa" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 4 ✖

tax_kingdom 1

  • Metazoa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA922890 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12377565 12377565 PRJNA922890_P_NODE_66870_length_237_cov_0.869048_g66460_i0 PRJNA922890 66870 237 0.869048 2.05964376 Metazoa 33208 Echinodermata other_Eukaryota 124 5.22e-31   NR XP_038044570.1 46514 g66460 i0 75 22.5822784810127 76 19 96.2 0 230 3 508 583 XP_038044570.1 ATP-binding cassette sub-family F member 2-like [Patiria miniata] diamond 5352 125 0.992 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria miniata
27474364 27474364 PRJNA922890_P_NODE_53063_length_268_cov_1.457286_g52653_i0 PRJNA922890 53063 268 1.457286 3.90552648 Metazoa 33208 Echinodermata other_Eukaryota 78.6 8.31e-15   NR XP_041483035.1 7654 g52653 i0 39.3 4.74626865671642 89 54 99.6 0 1 267 217 305 XP_041483035.1 growth hormone-regulated TBC protein 1-A-like [Lytechinus variegatus] diamond 1272 78.6 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus
28074166 28074166 PRJNA922890_P_NODE_27485_length_363_cov_2.112245_g27075_i0 PRJNA922890 27485 363 2.112245 7.66744935 Metazoa 33208 Echinodermata other_Eukaryota 91.3 1.55e-19   NR XP_030850438.1 7668 g27075 i0 41.3 2.72727272727273 109 63 89.3 1 1 324 150 258 XP_030850438.1 40S ribosomal protein S4 [Strongylocentrotus purpuratus] diamond 990 91.3 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
32364317 32364317 PRJNA922890_P_NODE_71919_length_234_cov_0.872727_g71509_i0 PRJNA922890 71919 234 0.872727 2.04218118 Holothuria leucospilota 206669 Echinodermata other_Eukaryota 109 4.9e-26   NR KAJ8046492.1 206669 g71509 i0 70.5 3 78 23 100 0 1 234 333 410 KAJ8046492.1 Rab GDP dissociation inhibitor alpha [Holothuria leucospilota] diamond 702 109 1 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Holothuriidae Holothuria Holothuria leucospilota

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;