RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA922890", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA922890 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1251863 1251863 PRJNA922890_P_NODE_13421_length_522_cov_1.584989_g13014_i0 PRJNA922890 13421 522 1.584989 8.27364258 Bacteria 2 Bacteria Bacteria 948 0   NTclustered gi|365822471|gb|JN935874.1| 51364 g13014 i0 99.425 176.992337164751 522 3 100 0 1 522 1457 936 Mycoplasma cottewii strain VIS 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 92390 948 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma cottewii
7630028 7630028 PRJNA922890_P_NODE_42766_length_297_cov_1.359649_g42356_i0 PRJNA922890 42766 297 1.359649 4.03815753 Mycoplasma 2093 Bacteria Bacteria 527 3.759999999999999e-145   NTclustered gi|54609775|gb|AY765214.1| 51364 g42356 i0 98.653 185.959595959596 297 4 100 0 1 297 695 399 Mycoplasma cottewii strain ATCC 43093 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 55230 527 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma cottewii
12731447 12731447 PRJNA922890_P_NODE_64990_length_241_cov_1.168605_g64580_i0 PRJNA922890 64990 241 1.168605 2.81633805 root 1 Root_unresolved Root_unresolved 52.8 0.022   NTclustered gi|1851159111|gb|CP054256.1| 2102 g64580 i0 100 11.1535269709544 28 0 12 0 162 189 261445 261472 Mycoplasma mycoides strain T1/44 GP chromosome, complete genome blastn 2688 52.8 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma mycoides

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;