RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA922890", tax_clade = "PVC group" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA922890 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13652016 13652016 PRJNA922890_P_NODE_59611_length_253_cov_1.173913_g59201_i0 PRJNA922890 59611 253 1.173913 2.96999989 Luteolibacter sp. SL250 2995170 Bacteria Bacteria 446 9.01e-121   NTclustered gi|2381117106|gb|CP113054.1| 2995170 g59201 i0 98.419 288.739130434783 253 4 100 0 1 253 1194 1446 Luteolibacter sp. SL250 chromosome blastn 73051 446 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. SL250
31833367 31833367 PRJNA922890_P_NODE_75217_length_232_cov_0.895706_g74807_i0 PRJNA922890 75217 232 0.895706 2.07803792 Bacteria 2 Bacteria Bacteria 47.4 7.58e-4   NR QDU83038.1 2528008 g74807 i0 41.5 3.45258620689655 65 36 84.1 2 19 213 93 155 QDU83038.1 hypothetical protein Pla163_01340 [Planctomycetes bacterium Pla163] diamond 801 47.4 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia     Rohdeia Rohdeia mirabilis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;