RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

13 rows where bioproject = "PRJNA922890" and tax_clade = "Discoba"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 13 ✖

bioproject 1

  • PRJNA922890 · 13 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1252040 1252040 PRJNA922890_P_NODE_77841_length_231_cov_0.888889_g77431_i0 PRJNA922890 77841 231 0.888889 2.05333359 Acrasis kona 1008807 Heterolobosea other_Eukaryota 78.2 9.87e-15   NR KAL0484321.1 1008807 g77431 i0 59.4 2.71428571428571 69 24 84.4 1 17 211 1 69 KAL0484321.1 seryl tRS [Acrasis kona] diamond 627 78.2 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona
12376610 12376610 PRJNA922890_P_NODE_12910_length_532_cov_2.710583_g12503_i0 PRJNA922890 12910 532 2.710583 14.42030156 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 196 2.889999999999999e-55   NR XP_044541595.1 51637 g12503 i0 50.3 3.06203007518797 181 85 99.8 2 532 2 135 314 XP_044541595.1 uncharacterized protein C9374_014273, partial [Naegleria lovaniensis] diamond 1629 196 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis
13652274 13652274 PRJNA922890_P_NODE_72891_length_233_cov_0.890244_g72481_i0 PRJNA922890 72891 233 0.890244 2.07426852 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 381 2.3399999999999995e-101   NTclustered gi|290981899|ref|XM_002673623.1| 5762 g72481 i0 96.137 1 233 9 100 0 1 233 447 679 Naegleria gruberi arginine methyltransferase (NAEGRDRAFT_80851), partial mRNA blastn 233 381 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
26644577 26644577 PRJNA922890_P_NODE_67161_length_237_cov_0.869048_g66751_i0 PRJNA922890 67161 237 0.869048 2.05964376 Diplonema papillatum 91374 Euglenozoa other_Eukaryota 51.2 3.55e-5   NR KAJ9457873.1 91374 g66751 i0 34.6 2.87341772151899 78 39 98.7 2 236 3 863 928 KAJ9457873.1 hypothetical protein DIPPA_28029 [Diplonema papillatum] diamond 681 51.2 1 Eukaryota Discoba   Euglenozoa Diplonemea   Diplonemidae Diplonema Diplonema papillatum
27340899 27340899 PRJNA922890_P_NODE_65703_length_239_cov_1.364706_g65293_i0 PRJNA922890 65703 239 1.364706 3.26164734 Euglena gracilis 3039 Euglenozoa other_Eukaryota 70.9 4.46e-12   NR BAB12024.1 3039 g65293 i0 57.8 0.803347280334728 64 26 79.1 1 4 192 1171 1234 BAB12024.1 pyruvate: NADP+ oxidoreductase [Euglena gracilis] diamond 192 70.9 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Euglena Euglena gracilis
28137566 28137566 PRJNA922890_P_NODE_84345_length_226_cov_2.222930_g83935_i0 PRJNA922890 84345 226 2.22293 5.0238218 root 1 Root_unresolved Root_unresolved 108 1.15e-25   NR XP_044563775.1 5763 g83935 i0 63 3.87610619469027 73 27 96.9 0 221 3 233 305 XP_044563775.1 Catalase, putative [Naegleria fowleri] diamond 876 108 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
28548102 28548102 PRJNA922890_P_NODE_76247_length_232_cov_0.883436_g75837_i0 PRJNA922890 76247 232 0.883436 2.04957152 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 80.9 1.23e-15   NR XP_002676815.1 5762 g75837 i0 42.9 9.85344827586207 77 44 99.6 0 1 231 1021 1097 XP_002676815.1 FH2 domain-containing protein [Naegleria gruberi] diamond 2286 81.6 0.991421568627451 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
29495088 29495088 PRJNA922890_P_NODE_61830_length_248_cov_1.083799_g61420_i0 PRJNA922890 61830 248 1.083799 2.68782152 Trypanosomatidae 5654 Euglenozoa other_Eukaryota 41.6 0.0218   NR XP_010698053.1 5679 g61420 i0 41.5 1.71774193548387 53 31 64.1 0 4 162 26 78 XP_010698053.1 dystroglycan-like protein, putative [Leishmania panamensis] diamond 426 41.6 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania panamensis
29961473 29961473 PRJNA922890_P_NODE_55231_length_263_cov_1.231959_g54821_i0 PRJNA922890 55231 263 1.231959 3.24005217 Acrasis kona 1008807 Heterolobosea other_Eukaryota 62.8 4.23e-9   NR KAL0478177.1 1008807 g54821 i0 36.9 0.958174904942966 84 53 95.8 0 1 252 407 490 KAL0478177.1 RNAi component PIWI/Argonaut [Acrasis kona] diamond 252 62.8 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona
31036042 31036042 PRJNA922890_P_NODE_45375_length_289_cov_1.318182_g44965_i0 PRJNA922890 45375 289 1.318182 3.80954598 Stygiella incarcerata 1712417 Root_unresolved Root_unresolved 42.7 0.0492   NR ANM86117.1 1712417 g44965 i0 61.3 0.321799307958477 31 12 32.2 0 289 197 179 209 ANM86117.1 60S ribosomal protein L10-2 [Stygiella incarcerata] diamond 93 42.7 1 Eukaryota Discoba       Jakobida Stygiellidae Stygiella Stygiella incarcerata
31043337 31043337 PRJNA922890_P_NODE_79495_length_230_cov_0.894410_g79085_i0 PRJNA922890 79495 230 0.89441 2.057143 Euglenozoa 33682 Euglenozoa other_Eukaryota 84.7 1.53e-18   NR XP_815813.1 5693 g79085 i0 67.2 7.56521739130435 64 21 83.5 0 3 194 46 109 XP_815813.1 60S ribosomal protein L34, putative [Trypanosoma cruzi] diamond 1740 85.5 0.990643274853801 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma cruzi
31169154 31169154 PRJNA922890_P_NODE_77215_length_231_cov_0.901235_g76805_i0 PRJNA922890 77215 231 0.901235 2.08185285 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 67.8 4.88e-11   NR KAL0489675.1 1008807 g76805 i0 52.4 1.71428571428571 63 29 80.5 1 10 195 424 486 KAL0489675.1 hypothetical protein AKO1_009120 [Acrasis kona] diamond 396 68.2 0.994134897360704 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona
32371597 32371597 PRJNA922890_P_NODE_77859_length_231_cov_0.888889_g77449_i0 PRJNA922890 77859 231 0.888889 2.05333359 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 123 1.15e-30   NR XP_002681804.1 5762 g77449 i0 76.3 27.5844155844156 76 18 98.7 0 2 229 465 540 XP_002681804.1 eukaryotic elongation factor 1 alpha family protein [Naegleria gruberi] diamond 6372 123 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;