RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA922890", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 9 ✖

tax_clade 1

  • Amoebozoa · 9 ✖

bioproject 1

  • PRJNA922890 · 9 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18749128 18749128 PRJNA922890_P_NODE_14755_length_498_cov_1.303030_g14347_i0 PRJNA922890 14755 498 1.30303 6.4890894 Ripella tribonemae 2047823 Discosea other_Eukaryota 797 0   NTclustered gi|1269228472|gb|MF683597.1| 2047823 g14347 i0 95.618 102.347389558233 502 12 100 7 1 498 1031 536 Ripella tribonemae clone 22.1.15 18S ribosomal RNA gene, partial sequence blastn 50969 797 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella tribonemae
20024280 20024280 PRJNA922890_P_NODE_20256_length_424_cov_1.095775_g19846_i0 PRJNA922890 20256 424 1.095775 4.646086 Vannella persistens 303303 Discosea other_Eukaryota 767 0   NTclustered gi|261599932|dbj|AB525840.1| 303303 g19846 i0 99.292 99.8372641509434 424 3 100 0 1 424 554 131 Vannella persistens gene for 18S ribosomal RNA, partial sequence, strain: NHE(Vp)1-IR blastn 42331 767 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella persistens
31225174 31225174 PRJNA922890_P_NODE_51395_length_272_cov_1.428571_g50985_i0 PRJNA922890 51395 272 1.428571 3.88571312 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 95.5 1.04e-20   NR XP_004367854.1 1257118 g50985 i0 53.2 1.69852941176471 77 36 84.9 0 4 234 211 287 XP_004367854.1 NEDD8activating enzyme E1 catalytic subunit [Acanthamoeba castellanii str. Neff] diamond 462 95.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31351920 31351920 PRJNA922890_P_NODE_60716_length_250_cov_1.596685_g60306_i0 PRJNA922890 60716 250 1.596685 3.9917125 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 140 5.63e-40   NR XP_004336000.1 1257118 g60306 i0 81.9 5.976 83 15 99.6 0 2 250 72 154 XP_004336000.1 ribosomal protein S4, putative, partial [Acanthamoeba castellanii str. Neff] diamond 1494 140 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31359258 31359258 PRJNA922890_P_NODE_55496_length_262_cov_1.694301_g55086_i0 PRJNA922890 55496 262 1.694301 4.43906862 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 112 4.79e-29   NR XP_004358287.1 1257118 g55086 i0 66.3 2.94274809160305 86 29 98.5 0 260 3 96 181 XP_004358287.1 eukaryotic ribosomal protein L18, putative [Acanthamoeba castellanii str. Neff] diamond 771 113 0.991150442477876 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31446772 31446772 PRJNA922890_P_NODE_72936_length_233_cov_0.890244_g72526_i0 PRJNA922890 72936 233 0.890244 2.07426852 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 117 2.31e-29   NR XP_004341646.1 1257118 g72526 i0 79.4 0.811158798283262 63 13 81.1 0 43 231 136 198 XP_004341646.1 papain family cysteine protease containing protein [Acanthamoeba castellanii str. Neff] diamond 189 117 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31675295 31675295 PRJNA922890_P_NODE_73857_length_233_cov_0.878049_g73447_i0 PRJNA922890 73857 233 0.878049 2.04585417 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 113 3.18e-27   NR XP_004334901.1 1257118 g73447 i0 63.2 5.84549356223176 76 28 97.9 0 6 233 315 390 XP_004334901.1 plastin 3 (T isoform), putative [Acanthamoeba castellanii str. Neff] diamond 1362 113 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31921199 31921199 PRJNA922890_P_NODE_67977_length_236_cov_0.874251_g67567_i0 PRJNA922890 67977 236 0.874251 2.06323236 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 119 1.69e-30   NR XP_004356728.1 1257118 g67567 i0 75.6 4.95762711864407 78 19 99.2 0 234 1 53 130 XP_004356728.1 ribosomal protein L19e, putative [Acanthamoeba castellanii str. Neff] diamond 1170 119 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32111113 32111113 PRJNA922890_P_NODE_69978_length_235_cov_0.867470_g69568_i0 PRJNA922890 69978 235 0.86747 2.0385545 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 67 9.53e-11   NR XP_004336224.1 1257118 g69568 i0 60 1.41702127659574 50 20 63.8 0 85 234 709 758 XP_004336224.1 dynamin family protein [Acanthamoeba castellanii str. Neff] diamond 333 67 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;