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contig_metadata

20 rows where bioproject = "PRJNA917598", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 20 ✖

tax_kingdom 1

  • Pseudomonadati · 20 ✖

bioproject 1

  • PRJNA917598 · 20 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3447892 3447892 PRJNA917598_P_NODE_83823_length_249_cov_0.875000_g82879_i0 PRJNA917598 83823 249 0.875 2.17875 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 141 7.12e-41   NR GJM17675.1 2202153 g82879 i0 82.9 2.96385542168675 82 14 98.8 0 2 247 8 89 GJM17675.1 MAG: hypothetical protein DHS20C13_30020 [Thermodesulfobacteriota bacterium] diamond 738 141 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
4724466 4724466 PRJNA917598_P_NODE_38684_length_369_cov_1.560811_g37740_i0 PRJNA917598 38684 369 1.560811 5.75939259 Pseudomonadati 3379134 Bacteria Bacteria 249 2.13e-78   NR PLX93317.1 892 g37740 i0 97.6 76 123 3 100 0 1 369 155 277 PLX93317.1 MAG: SAM-dependent DNA methyltransferase [Desulfuromonas sp.] diamond 28044 249 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Desulfuromonadaceae Desulfuromonas Desulfuromonas sp.
15279539 15279539 PRJNA917598_P_NODE_68952_length_274_cov_1.502488_g68008_i0 PRJNA917598 68952 274 1.502488 4.11681712 Pseudomonadati 3379134 Bacteria Bacteria 140 3.65e-38   NR WP_066853628.1 1560234 g68008 i0 64.4 6.83211678832117 90 32 98.5 0 2 271 253 342 WP_066853628.1 HD-GYP domain-containing protein [Halodesulfovibrio spirochaetisodalis] diamond 1872 141 0.99290780141844 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Halodesulfovibrio Halodesulfovibrio spirochaetisodalis
17473801 17473801 PRJNA917598_P_NODE_25974_length_453_cov_4.221053_g25030_i0 PRJNA917598 25974 453 4.221053 19.12137009 Nitratidesulfovibrio oxamicus 32016 Bacteria Bacteria 100 1.09e-24   NR WP_196610302.1 32016 g25030 i0 76.7 1.19205298013245 60 14 39.7 0 196 17 1 60 WP_196610302.1 hypothetical protein [Nitratidesulfovibrio oxamicus] diamond 540 100 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Nitratidesulfovibrio Nitratidesulfovibrio oxamicus
21297602 21297602 PRJNA917598_P_NODE_2597_length_1561_cov_3.276882_g2139_i0 PRJNA917598 2597 1561 3.276882 51.15212802 Smithellaceae bacterium 2964540 Bacteria Bacteria 686 0   NTclustered gi|2626216295|emb|OY821638.1| 2964540 g2139 i0 80.466 1.61563100576553 901 172 58 3 624 1522 4801644 4802542 MAG: Smithellaceae bacterium isolate 7d888188-1d27-4603-a379-950c855845c6 genome assembly, chromosome: 1 blastn 2522 686 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales Smithellaceae   Smithellaceae bacterium
26810407 26810407 PRJNA917598_P_NODE_91701_length_244_cov_0.900585_g90757_i0 PRJNA917598 91701 244 0.900585 2.1974274 Pseudomonadati 3379134 Bacteria Bacteria 62.4 4.57e-9   NR MEW6594902.1 2202153 g90757 i0 38.7 3.68852459016393 75 46 92.2 0 244 20 648 722 MEW6594902.1 response regulator [Thermodesulfobacteriota bacterium] diamond 900 62.8 0.993630573248408 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
27845745 27845745 PRJNA917598_P_NODE_18664_length_540_cov_2.203426_g17728_i0 PRJNA917598 18664 540 2.203426 11.8985004 Desulfonatronovibrio sp. MSAO_Bac4 2293858 Bacteria Bacteria 89.4 1.99e-17   NR RQD64540.1 2293858 g17728 i0 80.4 1.10555555555556 51 10 28.3 0 163 11 6 56 RQD64540.1 MAG: dTDP-glucose 4,6-dehydratase [Desulfonatronovibrio sp. MSAO_Bac4] diamond 597 89.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfonatronovibrionaceae Desulfonatronovibrio Desulfonatronovibrio sp. MSAO_Bac4
28319456 28319456 PRJNA917598_P_NODE_17066_length_567_cov_1.917004_g16131_i0 PRJNA917598 17066 567 1.917004 10.86941268 Desulfococcaceae bacterium HSG7 3055597 Bacteria Bacteria 140 8.06e-36   NR MDM8554390.1 3055597 g16131 i0 41.8 2.78306878306878 182 95 94.7 4 563 27 140 313 MDM8554390.1 radical SAM protein [Desulfococcaceae bacterium HSG7] diamond 1578 140 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfococcaceae   Desulfococcaceae bacterium HSG7
28382621 28382621 PRJNA917598_P_NODE_11986_length_684_cov_2.317512_g11069_i0 PRJNA917598 11986 684 2.317512 15.85178208 Maridesulfovibrio sp. 2795000 Bacteria Bacteria 117 1.8e-27   NR WP_320008946.1 2795000 g11069 i0 41.4 2.27631578947368 133 77 58.3 1 408 10 5 136 WP_320008946.1 P-type conjugative transfer ATPase TrbB [Maridesulfovibrio sp.] diamond 1557 117 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Maridesulfovibrio Maridesulfovibrio sp.
28674190 28674190 PRJNA917598_P_NODE_14387_length_622_cov_1.220401_g13453_i0 PRJNA917598 14387 622 1.220401 7.59089422 Thermodesulfobacteriota 200940 Bacteria Bacteria 213 1.87e-62   NR MDP3429836.1 52017 g13453 i0 52.4 12.0337620578778 208 98 99.8 1 621 1 256 463 MDP3429836.1 efflux RND transporter permease subunit [Desulfomicrobium sp.] diamond 7485 213 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfomicrobiaceae Desulfomicrobium Desulfomicrobium sp.
29203797 29203797 PRJNA917598_P_NODE_52649_length_315_cov_1.272727_g51705_i0 PRJNA917598 52649 315 1.272727 4.00909005 Candidatus Dadabacteria bacterium 2080303 Bacteria Bacteria 137 3.68e-40   NR KAB2829472.1 2080303 g51705 i0 90.5 0.704761904761905 74 7 70.5 0 12 233 2 75 KAB2829472.1 MAG: zinc ribbon domain-containing protein [Candidatus Dadabacteria bacterium] diamond 222 137 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Candidatus Dadabacteria       Candidatus Dadabacteria bacterium
29235238 29235238 PRJNA917598_P_NODE_24529_length_467_cov_1.228426_g23586_i0 PRJNA917598 24529 467 1.228426 5.73674942 Desulfobacteraceae bacterium 2049433 Bacteria Bacteria 137 8.4e-36   NR HDH86499.1 2049433 g23586 i0 48.9 2.74946466809422 135 68 86.7 1 467 63 57 190 HDH86499.1 glycosyltransferase [Desulfobacteraceae bacterium] diamond 1284 137 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae   Desulfobacteraceae bacterium
29337253 29337253 PRJNA917598_P_NODE_78009_length_254_cov_1.657459_g77065_i0 PRJNA917598 78009 254 1.657459 4.20994586 Bacteria 2 Bacteria Bacteria 80.9 1.42e-15   NR MCG8617155.1 2044940 g77065 i0 56.7 6.15354330708661 67 29 79.1 0 204 4 2 68 MCG8617155.1 hypothetical protein [Desulfobacterales bacterium] diamond 1563 81.6 0.991421568627451 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium
29519322 29519322 PRJNA917598_P_NODE_55570_length_305_cov_1.991379_g54626_i0 PRJNA917598 55570 305 1.991379 6.07370595 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 50.1 8.99e-5   NR MEW6667361.1 2202153 g54626 i0 37.3 0.501639344262295 51 32 50.2 0 162 10 1 51 MEW6667361.1 hypothetical protein [Thermodesulfobacteriota bacterium] diamond 153 50.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
29930058 29930058 PRJNA917598_P_NODE_49651_length_325_cov_1.833333_g48707_i0 PRJNA917598 49651 325 1.833333 5.95833225 Syntrophorhabdales bacterium 2819264 Bacteria Bacteria 56.2 7.37e-7   NR HME44994.1 2819264 g48707 i0 34.6 0.987692307692308 107 65 97.8 2 321 4 67 169 HME44994.1 hypothetical protein [Syntrophorhabdales bacterium] diamond 321 56.2 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophorhabdia Syntrophorhabdales     Syntrophorhabdales bacterium
30435622 30435622 PRJNA917598_P_NODE_17813_length_554_cov_2.642412_g16877_i0 PRJNA917598 17813 554 2.642412 14.63896248 Desulfobacteraceae bacterium 2049433 Bacteria Bacteria 57.8 6.6e-8   NR MBC2734153.1 2049433 g16877 i0 81.4 0.232851985559567 43 8 23.3 0 209 81 1 43 MBC2734153.1 hypothetical protein [Desulfobacteraceae bacterium] diamond 129 57.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae   Desulfobacteraceae bacterium
31351904 31351904 PRJNA917598_P_NODE_85496_length_247_cov_1.752874_g84552_i0 PRJNA917598 85496 247 1.752874 4.32959878 Desulforhopalus sp. 2099376 Bacteria Bacteria 42.7 0.0403   NR MFT5701255.1 2099376 g84552 i0 39.6 0.643724696356275 53 28 60.7 2 180 31 714 765 MFT5701255.1 diguanylate cyclase (GGDEF)-like protein [Desulforhopalus sp.] diamond 159 42.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfocapsaceae Desulforhopalus Desulforhopalus sp.
31510125 31510125 PRJNA917598_P_NODE_4736_length_1134_cov_2.987747_g4070_i0 PRJNA917598 4736 1134 2.987747 33.88105098 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 124 2.06e-29   NR MEW6076227.1 2202153 g4070 i0 59.4 0.28042328042328 106 41 27.5 1 823 1134 55 160 MEW6076227.1 L,D-transpeptidase family protein [Thermodesulfobacteriota bacterium] diamond 318 124 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
32427521 32427521 PRJNA917598_P_NODE_95599_length_241_cov_0.916667_g94655_i0 PRJNA917598 95599 241 0.916667 2.20916747 Desulfuromonadales bacterium C 2099678 Bacteria Bacteria 85.5 3.14e-17   NR OEU50711.1 1869311 g94655 i0 55.6 0.896265560165975 72 32 89.6 0 239 24 99 170 OEU50711.1 MAG: hypothetical protein BA871_16540 [Desulfuromonadales bacterium C00003096] diamond 216 85.5 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales     Desulfuromonadales bacterium C00003096
32781543 32781543 PRJNA917598_P_NODE_34860_length_389_cov_1.354430_g33916_i0 PRJNA917598 34860 389 1.35443 5.2687327 Pseudomonadati 3379134 Bacteria Bacteria 58.5 4.25e-7   NR WP_300719211.1 167968 g33916 i0 42.9 2.39845758354756 63 36 48.6 0 7 195 45 107 WP_300719211.1 glycerophosphodiester phosphodiesterase family protein [uncultured Desulfovibrio sp.] diamond 933 58.5 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio uncultured Desulfovibrio sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;