contig_metadata
11 rows where bioproject = "PRJNA917598", tax_kingdom = "Pseudomonadati" and tax_phylum = "Spirochaetota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 9824738 | 9824738 | PRJNA917598_P_NODE_78588_length_253_cov_1.283333_g77644_i0 | PRJNA917598 | 78588 | 253 | 1.283333 | 3.24683249 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 125 | 1.56e-32 | NR | NCN08299.1 | 178 | g77644 | i0 | 87.1 | 15.8181818181818 | 70 | 9 | 83 | 0 | 37 | 246 | 1 | 70 | NCN08299.1 polysaccharide biosynthesis protein [Leptospira sp.] | diamond | 4002 | 125 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Leptospirales | Leptospiraceae | Leptospira | Leptospira sp. | ||
| 21298453 | 21298453 | PRJNA917598_P_NODE_59397_length_293_cov_1.068182_g58453_i0 | PRJNA917598 | 59397 | 293 | 1.068182 | 3.12977326 | Spirochaetota bacterium | 2202144 | Bacteria | Bacteria | 213 | 1.18e-50 | NTclustered | gi|2621703426|emb|OY760686.1| | 2202144 | g58453 | i0 | 81.343 | 179 | 268 | 45 | 91 | 5 | 1 | 267 | 1927 | 2190 | MAG: Spirochaetota bacterium isolate b615e79e-4617-45ea-95f9-f7a736470f88 genome assembly, chromosome: 1 | blastn | 52447 | 213 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetota bacterium | ||||||
| 25123048 | 25123048 | PRJNA917598_P_NODE_81460_length_250_cov_0.870056_g80516_i0 | PRJNA917598 | 81460 | 250 | 0.870056 | 2.17514 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 146 | 6.6499999999999986e-40 | NR | HON89143.1 | 2026792 | g80516 | i0 | 81.3 | 9.78 | 80 | 15 | 96 | 0 | 9 | 248 | 184 | 263 | HON89143.1 phosphopyruvate hydratase [Spirochaetales bacterium] | diamond | 2445 | 147 | 0.993197278911565 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Spirochaetales bacterium | ||||
| 28389919 | 28389919 | PRJNA917598_P_NODE_64526_length_282_cov_2.559809_g63582_i0 | PRJNA917598 | 64526 | 282 | 2.559809 | 7.21866138 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 134 | 3.97e-35 | NR | WP_167879896.1 | 2023178 | g63582 | i0 | 71.4 | 5.65957446808511 | 91 | 26 | 96.8 | 0 | 9 | 281 | 254 | 344 | WP_167879896.1 restriction endonuclease subunit S [Leptospira levettii] | diamond | 1596 | 134 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Leptospirales | Leptospiraceae | Leptospira | Leptospira levettii | ||
| 28831919 | 28831919 | PRJNA917598_P_NODE_41888_length_355_cov_1.003546_g40944_i0 | PRJNA917598 | 41888 | 355 | 1.003546 | 3.5625883 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 101 | 2.49e-22 | NR | MBP6740861.1 | 2026757 | g40944 | i0 | 57.1 | 1.57183098591549 | 91 | 36 | 74.4 | 1 | 353 | 90 | 446 | 536 | MBP6740861.1 AAA family ATPase [Leptospiraceae bacterium] | diamond | 558 | 101 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Leptospirales | Leptospiraceae | Leptospiraceae bacterium | |||
| 29961448 | 29961448 | PRJNA917598_P_NODE_70591_length_271_cov_1.090909_g69647_i0 | PRJNA917598 | 70591 | 271 | 1.090909 | 2.95636339 | Leptospiraceae bacterium | 2026757 | Bacteria | Bacteria | 100 | 1.86e-22 | NR | HNF15221.1 | 2026757 | g69647 | i0 | 59.1 | 0.974169741697417 | 88 | 35 | 96.3 | 1 | 6 | 266 | 177 | 264 | HNF15221.1 N-6 DNA methylase [Leptospiraceae bacterium] | diamond | 264 | 100 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Leptospirales | Leptospiraceae | Leptospiraceae bacterium | |||
| 31320142 | 31320142 | PRJNA917598_P_NODE_95175_length_241_cov_0.916667_g94231_i0 | PRJNA917598 | 95175 | 241 | 0.916667 | 2.20916747 | Spirochaetia bacterium | 2053615 | Bacteria | Bacteria | 85.1 | 2.18e-19 | NR | MFO7729640.1 | 2053615 | g94231 | i0 | 93.3 | 0.560165975103734 | 45 | 1 | 56 | 1 | 135 | 1 | 8 | 50 | MFO7729640.1 hypothetical protein [Spirochaetia bacterium] | diamond | 135 | 85.1 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetia bacterium | |||||
| 31707019 | 31707019 | PRJNA917598_P_NODE_72017_length_268_cov_1.158974_g71073_i0 | PRJNA917598 | 72017 | 268 | 1.158974 | 3.10605032 | Bacteria | 2 | Bacteria | Bacteria | 108 | 2.6e-25 | NR | MCL2443097.1 | 166 | g71073 | i0 | 62 | 30.4925373134328 | 79 | 30 | 88.4 | 0 | 263 | 27 | 679 | 757 | MCL2443097.1 ATP-binding protein [Treponema sp.] | diamond | 8172 | 109 | 0.990825688073395 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema sp. | ||
| 31762941 | 31762941 | PRJNA917598_P_NODE_45557_length_340_cov_1.153558_g44613_i0 | PRJNA917598 | 45557 | 340 | 1.153558 | 3.9220972 | Leptospira bandrabouensis | 2484903 | Bacteria | Bacteria | 51.2 | 1.02e-4 | NR | WP_135781439.1 | 2484903 | g44613 | i0 | 33.7 | 2.39117647058824 | 92 | 54 | 75.9 | 3 | 261 | 4 | 94 | 184 | WP_135781439.1 hypothetical protein [Leptospira bandrabouensis] | diamond | 813 | 51.2 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Leptospirales | Leptospiraceae | Leptospira | Leptospira bandrabouensis | ||
| 32206018 | 32206018 | PRJNA917598_P_NODE_90258_length_244_cov_1.783626_g89314_i0 | PRJNA917598 | 90258 | 244 | 1.783626 | 4.35204744 | Exilispira sp. | 2699745 | Bacteria | Bacteria | 95.5 | 9.5e-21 | NR | HPC38877.1 | 2699745 | g89314 | i0 | 53.8 | 5.37295081967213 | 78 | 36 | 95.9 | 0 | 238 | 5 | 4 | 81 | HPC38877.1 L-glutamate gamma-semialdehyde dehydrogenase [Exilispira sp.] | diamond | 1311 | 95.5 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Exilispira | Exilispira sp. | |||
| 32395841 | 32395841 | PRJNA917598_P_NODE_32979_length_400_cov_2.082569_g32035_i0 | PRJNA917598 | 32979 | 400 | 2.082569 | 8.330276 | Leptospiraceae bacterium | 2026757 | Bacteria | Bacteria | 165 | 2.36e-44 | NR | MBP6740310.1 | 2026757 | g32035 | i0 | 64.7 | 0.9975 | 133 | 44 | 99.8 | 2 | 1 | 399 | 146 | 275 | MBP6740310.1 DEAD/DEAH box helicase [Leptospiraceae bacterium] | diamond | 399 | 165 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Leptospirales | Leptospiraceae | Leptospiraceae bacterium |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;