RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA917598" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 5 ✖

bioproject 1

  • PRJNA917598 · 5 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
896726 896726 PRJNA917598_P_NODE_71781_length_268_cov_1.579487_g70837_i0 PRJNA917598 71781 268 1.579487 4.23302516 Fusobacterium nucleatum 851 Bacteria Bacteria 496 9.429999999999999e-136   NTclustered gi|2704983719|gb|CP077132.1| 851 g70837 i0 100 100 268 0 100 0 1 268 280294 280027 Fusobacterium nucleatum strain KCOM3208 chromosome, complete genome blastn 26800 496 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
3803770 3803770 PRJNA917598_P_NODE_89323_length_245_cov_0.895349_g88379_i0 PRJNA917598 89323 245 0.895349 2.19360505 Cetobacterium 180162 Bacteria Bacteria 425 1.1299999999999999e-114   NTclustered gi|2666490759|gb|CP143321.1| 188913 g88379 i0 97.959 5 245 5 100 0 1 245 63876 63632 Cetobacterium somerae strain ceto plasmid p2, complete sequence blastn 1225 425 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
11455506 11455506 PRJNA917598_P_NODE_89349_length_245_cov_0.895349_g88405_i0 PRJNA917598 89349 245 0.895349 2.19360505 Fusobacterium 848 Bacteria Bacteria 453 5.1900000000000006e-123   NTclustered gi|2704983719|gb|CP077132.1| 851 g88405 i0 100 100 245 0 100 0 1 245 1439105 1439349 Fusobacterium nucleatum strain KCOM3208 chromosome, complete genome blastn 24500 453 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
14005759 14005759 PRJNA917598_P_NODE_89251_length_245_cov_0.895349_g88307_i0 PRJNA917598 89251 245 0.895349 2.19360505 Cetobacterium 180162 Bacteria Bacteria 409 1.1399999999999998e-109   NTclustered gi|2666488225|gb|CP143319.1| 188913 g88307 i0 96.735 5 245 8 100 0 1 245 1368333 1368577 Cetobacterium somerae strain ceto chromosome, complete genome blastn 1225 409 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
25122897 25122897 PRJNA917598_P_NODE_75100_length_261_cov_1.414894_g74156_i0 PRJNA917598 75100 261 1.414894 3.69287334 uncultured Ilyobacter sp. 544433 Bacteria Bacteria 56.5 0.002   NTclustered gi|2814788370|emb|OY764863.2| 544433 g74156 i0 97.059 0.130268199233716 34 0 13 1 168 201 495002 494970 MAG: uncultured Ilyobacter sp. isolate 4b14623d-3041-4bcb-9ca5-1f7150ffa235 genome assembly, chromosome: 1 blastn 34 56.5 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Ilyobacter uncultured Ilyobacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;