RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

23 rows where bioproject = "PRJNA917598" and tax_clade = "core chlorophytes"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 23 ✖

bioproject 1

  • PRJNA917598 · 23 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2172130 2172130 PRJNA917598_P_NODE_72082_length_267_cov_2.902062_g71138_i0 PRJNA917598 72082 267 2.902062 7.74850554 Trebouxia sp. SL0000003 3350044 Plants Plants 261 3.73e-65   NTclustered gi|2917929622|emb|OZ234910.1| 3350044 g71138 i0 85.115 198.928838951311 262 32 97 6 5 264 2247230 2246974 Trebouxia sp. SL0000003 genome assembly, chromosome: 5 blastn 53114 261 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
7274046 7274046 PRJNA917598_P_NODE_34866_length_389_cov_1.275316_g33922_i0 PRJNA917598 34866 389 1.275316 4.96097924 Eukaryota 2759 Plants Plants 176 1.65e-51   NR KAK9809167.1 41462 g33922 i0 68.2 22.0025706940874 129 41 99.5 0 389 3 127 255 KAK9809167.1 hypothetical protein WJX72_010554 [[Myrmecia] bisecta] diamond 8559 177 0.994350282485876 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Myrmecia [Myrmecia] bisecta
7629784 7629784 PRJNA917598_P_NODE_83746_length_249_cov_0.875000_g82802_i0 PRJNA917598 83746 249 0.875 2.17875 Eukaryota 2759 Plants Plants 64.3 4.63e-10   NR KAF5832399.1 3046 g82802 i0 44.6 3.85542168674699 83 41 98.8 2 246 1 49 127 KAF5832399.1 hypothetical protein DUNSADRAFT_11731 [Dunaliella salina] diamond 960 64.7 0.993817619783617 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Dunaliellaceae Dunaliella Dunaliella salina
9824005 9824005 PRJNA917598_P_NODE_46748_length_335_cov_2.950382_g45804_i0 PRJNA917598 46748 335 2.950382 9.8837797 Chlorophyceae 3166 Plants Plants 85.9 1.23e-18   NR GFR49314.1 47775 g45804 i0 53.1 6.09850746268657 96 43 86 1 301 14 43 136 GFR49314.1 hypothetical protein Agub_g11337, partial [Astrephomene gubernaculifera] diamond 2043 85.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Astrephomenaceae Astrephomene Astrephomene gubernaculifera
10180432 10180432 PRJNA917598_P_NODE_96528_length_237_cov_2.048780_g95584_i0 PRJNA917598 96528 237 2.04878 4.8556086 Eukaryota 2759 Plants Plants 94.7 1.17e-20   NR ABQ81938.1 3116 g95584 i0 52.6 7.88607594936709 78 37 98.7 0 236 3 163 240 ABQ81938.1 elongation factor-1 alpha-like protein, partial [Ulva intestinalis] diamond 1869 95.1 0.995793901156677 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulvales Ulvaceae Ulva Ulva intestinalis
11098762 11098762 PRJNA917598_P_NODE_11789_length_690_cov_6.471637_g10876_i0 PRJNA917598 11789 690 6.471637 44.6542953 Haematococcus lacustris 44745 Plants Plants 813 0   NTclustered gi|1279575454|gb|MF683078.1| 44745 g10876 i0 88.109 245.430434782609 698 66 100 15 1 690 2910 3598 Haematococcus lacustris 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence; chloroplast blastn 169347 813 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris
11099505 11099505 PRJNA917598_P_NODE_41349_length_357_cov_1.369718_g40405_i0 PRJNA917598 41349 357 1.369718 4.88989326 Eukaryota 2759 Plants Plants 181 3.1499999999999988e-55   NR XP_011398857.1 3075 g40405 i0 75.4 111.050420168067 118 29 99.2 0 2 355 92 209 XP_011398857.1 60S ribosomal protein L10a-3 [Auxenochlorella protothecoides] diamond 39645 181 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
11100488 11100488 PRJNA917598_P_NODE_81689_length_250_cov_0.870056_g80745_i0 PRJNA917598 81689 250 0.870056 2.17514 Monoraphidium neglectum 145388 Plants Plants 52.8 0.023   NTclustered gi|926792394|ref|XM_014049217.1| 145388 g80745 i0 100 0.112 28 0 11 0 70 97 2182 2155 Monoraphidium neglectum hypothetical protein mRNA blastn 28 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
11100709 11100709 PRJNA917598_P_NODE_91369_length_244_cov_0.900585_g90425_i0 PRJNA917598 91369 244 0.900585 2.1974274 Eukaryota 2759 Plants Plants 111 1.97e-26   NR CAA87753.1 3161 g90425 i0 66.7 42.2459016393443 81 27 99.6 0 243 1 3 83 CAA87753.1 Cytochrome oxidase subunit I [Tetraselmis subcordiformis] diamond 10308 112 0.991071428571429 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorodendrophyceae Chlorodendrales Chlorodendraceae Tetraselmis Tetraselmis subcordiformis
18748686 18748686 PRJNA917598_P_NODE_8575_length_819_cov_5.987936_g7728_i0 PRJNA917598 8575 819 5.987936 49.04119584 Haematococcus lacustris 44745 Plants Plants 893 0   NTclustered gi|1279575454|gb|MF683078.1| 44745 g7728 i0 86.49 206.080586080586 829 93 100 16 1 819 2910 3729 Haematococcus lacustris 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence; chloroplast blastn 168780 893 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris
21298173 21298173 PRJNA917598_P_NODE_48277_length_330_cov_1.342412_g47333_i0 PRJNA917598 48277 330 1.342412 4.4299596 Chlamydomonas sp. ICE-L 309537 Plants Plants 248 3.69e-61   NTclustered gi|311697318|gb|HM748326.1| 309537 g47333 i0 80.952 75.9727272727273 336 44 99 16 5 330 616 941 Chlamydomonas sp. ICE-L S-adenosyl homocysteine hydrolase (LSAH1) mRNA, complete cds blastn 25071 248 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas sp. ICE-L
22574085 22574085 PRJNA917598_P_NODE_84878_length_248_cov_0.880000_g83934_i0 PRJNA917598 84878 248 0.88 2.1824 Chlamydomonas reinhardtii 3055 Plants Plants 132 2.8e-26   NTclustered gi|2082267188|ref|XM_043070972.1| 3055 g83934 i0 79.275 10.4395161290323 193 37 78 2 54 246 131 320 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_16g660150v5), mRNA blastn 2589 132 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
23848764 23848764 PRJNA917598_P_NODE_61059_length_289_cov_1.328704_g60115_i0 PRJNA917598 61059 289 1.328704 3.83995456 Koliella longiseta 33092 Plants Plants 331 3.07e-86   NTclustered gi|2724824530|gb|PP746562.1| 33092 g60115 i0 87.456 99.4325259515571 287 36 99 0 3 289 47703 47417 Koliella longiseta culture UTEX:339 mitochondrion, complete genome blastn 28736 331 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Koliellaceae Koliella Koliella longiseta
27561561 27561561 PRJNA917598_P_NODE_95524_length_241_cov_0.916667_g94580_i0 PRJNA917598 95524 241 0.916667 2.20916747 [Myrmecia] bisecta 41462 Plants Plants 52.4 1.07e-5   NR KAK9817993.1 41462 g94580 i0 60.8 0.634854771784232 51 19 62.2 1 91 240 7 57 KAK9817993.1 hypothetical protein WJX72_005455 [[Myrmecia] bisecta] diamond 153 52.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Myrmecia [Myrmecia] bisecta
27916208 27916208 PRJNA917598_P_NODE_58605_length_295_cov_2.081081_g57661_i0 PRJNA917598 58605 295 2.081081 6.13918895 Chlorophyta 3041 Plants Plants 66.2 2.75e-10   NR GAX84818.1 1157962 g57661 i0 65.5 4.21016949152542 87 29 88.5 1 2 262 229 314 GAX84818.1 hypothetical protein CEUSTIGMA_g12239.t1 [Chlamydomonas eustigma] diamond 1242 66.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas eustigma
28319503 28319503 PRJNA917598_P_NODE_64726_length_282_cov_1.473684_g63782_i0 PRJNA917598 64726 282 1.473684 4.15578888 Astrephomene gubernaculifera 47775 Plants Plants 82.8 1.69e-16   NR GFR44809.1 47775 g63782 i0 53.6 1.46808510638298 69 31 72.3 1 280 77 22 90 GFR44809.1 hypothetical protein Agub_g6145 [Astrephomene gubernaculifera] diamond 414 82.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Astrephomenaceae Astrephomene Astrephomene gubernaculifera
28326682 28326682 PRJNA917598_P_NODE_96946_length_229_cov_2.179487_g96002_i0 PRJNA917598 96946 229 2.179487 4.99102523 Chlorophyta 3041 Plants Plants 114 2.7700000000000003e-27   NR KAL4857675.1 3077 g96002 i0 68.1 9.43231441048035 72 23 94.3 0 216 1 1 72 KAL4857675.1 40S ribosomal protein S6 [Chlorella vulgaris] diamond 2160 114 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella vulgaris
28579548 28579548 PRJNA917598_P_NODE_96767_length_232_cov_2.735849_g95823_i0 PRJNA917598 96767 232 2.735849 6.34716968 Eukaryota 2759 Plants Plants 73.2 1.92e-14   NR XP_011400384.1 3075 g95823 i0 52.2 8.04310344827586 67 32 86.6 0 203 3 13 79 XP_011400384.1 60S ribosomal protein L22-2 [Auxenochlorella protothecoides] diamond 1866 73.9 0.990527740189445 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
28793031 28793031 PRJNA917598_P_NODE_93347_length_242_cov_1.822485_g92403_i0 PRJNA917598 93347 242 1.822485 4.4104137 Volvox reticuliferus 1737510 Plants Plants 53.1 1.06e-6   NR GIL81802.1 1737510 g92403 i0 47.8 1.73553719008264 46 24 57 0 3 140 69 114 GIL81802.1 hypothetical protein Vretifemale_10800 [Volvox reticuliferus] diamond 420 53.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox reticuliferus
29613733 29613733 PRJNA917598_P_NODE_82870_length_249_cov_0.875000_g81926_i0 PRJNA917598 82870 249 0.875 2.17875 Chlorella desiccata (nom. nud.) 1650286 Plants Plants 107 9.78e-25   NR KAG7669235.1 1650286 g81926 i0 64.6 2.96385542168675 82 29 98.8 0 246 1 165 246 KAG7669235.1 hypothetical protein KSW81_007394 [Chlorella desiccata (nom. nud.)] diamond 738 107 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Nannochloris Nannochloris sp. 'desiccata'
30253336 30253336 PRJNA917598_P_NODE_34112_length_393_cov_1.993750_g33168_i0 PRJNA917598 34112 393 1.99375 7.8354375 Eukaryota 2759 Plants Plants 129 4.38e-36   NR KAK2079597.1 3111 g33168 i0 66 10.763358778626 94 32 71.8 0 1 282 15 108 KAK2079597.1 60S ribosomal protein L35a-3 [Prototheca wickerhamii] diamond 4230 130 0.992307692307692 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca wickerhamii
31864975 31864975 PRJNA917598_P_NODE_85557_length_247_cov_1.614943_g84613_i0 PRJNA917598 85557 247 1.614943 3.98890921 root 1 Root_unresolved Root_unresolved 50.4 1.09e-5   NR PNH01224.1 47790 g84613 i0 55 4.46963562753036 40 18 48.6 0 246 127 67 106 PNH01224.1 Peptidyl-prolyl cis-trans isomerase [Tetrabaena socialis] diamond 1104 50.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Tetrabaenaceae Tetrabaena Tetrabaena socialis
32174541 32174541 PRJNA917598_P_NODE_93078_length_243_cov_0.905882_g92134_i0 PRJNA917598 93078 243 0.905882 2.20129326 Chlamydomonas sp. UWO 241 1653778 Plants Plants 108 2.57e-25   NR KAG1675970.1 1653778 g92134 i0 67.5 1.97530864197531 80 26 98.8 0 242 3 1053 1132 KAG1675970.1 hypothetical protein FOA52_014214 [Chlamydomonas sp. UWO 241] diamond 480 108 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas sp. UWO 241

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;