RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA917598", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA917598 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13649203 13649203 PRJNA917598_P_NODE_25231_length_460_cov_2.503876_g24288_i0 PRJNA917598 25231 460 2.503876 11.5178296 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 440 8.149999999999996e-119   NTclustered gi|2874253811|emb|OY969795.1| 464461 g24288 i0 86.408 91.095652173913 412 45 88 11 53 458 657299 656893 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 41904 440 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium
14005392 14005392 PRJNA917598_P_NODE_47211_length_334_cov_1.176245_g46267_i0 PRJNA917598 47211 334 1.176245 3.9286583 Candidatus Protochlamydia 282132 Bacteria Bacteria 484 2.6199999999999996e-132   NTclustered gi|1691252667|emb|BX908798.2| 264201 g46267 i0 92.836 174.928143712575 335 23 100 1 1 334 2154264 2153930 Candidatus Protochlamydia amoebophila UWE25 complete genome blastn 58426 484 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia amoebophila
20377946 20377946 PRJNA917598_P_NODE_7676_length_868_cov_1.800000_g6860_i0 PRJNA917598 7676 868 1.8 15.624 Waddlia 71666 Bacteria Bacteria 761 0   NTclustered gi|470485904|ref|NR_076723.1| 71667 g6860 i0 82.809 191.44930875576 890 116 99 25 2 865 1842 964 Waddlia chondrophila strain WSU 86-1044 23S ribosomal RNA gene, complete sequence blastn 166178 761 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Waddliaceae Waddlia Waddlia chondrophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;