RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA917598", tax_clade = "PVC group" and tax_phylum = "Candidatus Omnitrophota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Omnitrophota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA917598 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27782968 27782968 PRJNA917598_P_NODE_7844_length_858_cov_2.873885_g7022_i0 PRJNA917598 7844 858 2.873885 24.6579333 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 96.7 1.23e-19   NR MBU4343239.1 2035772 g7022 i0 28.3 3.53496503496504 244 130 79.7 9 123 806 14 228 MBU4343239.1 autotransporter outer membrane beta-barrel domain-containing protein [Candidatus Omnitrophota bacterium] diamond 3033 96.7 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
30593255 30593255 PRJNA917598_P_NODE_48993_length_328_cov_0.780392_g48049_i0 PRJNA917598 48993 328 0.780392 2.55968576 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 169 2.71e-52   NR MCG3176942.1 2035772 g48049 i0 96.5 0.786585365853659 86 3 78.7 0 327 70 12 97 MCG3176942.1 hypothetical protein [Candidatus Omnitrophota bacterium] diamond 258 169 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;