RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA917598", tax_clade = "Metamonada" and tax_superkingdom = "Eukaryota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

  • Eukaryota · 4 ✖

tax_clade 1

  • Metamonada · 4 ✖

bioproject 1

  • PRJNA917598 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
897266 897266 PRJNA917598_P_NODE_95661_length_241_cov_0.916667_g94717_i0 PRJNA917598 95661 241 0.916667 2.20916747 Streblomastix strix 222440 Preaxostyla other_Eukaryota 117 2.32e-29   NR KAA6392686.1 222440 g94717 i0 68.4 2.95020746887967 79 24 98.3 1 3 239 258 335 KAA6392686.1 MAG: putative 60S ribosomal protein L3, partial [Streblomastix strix] diamond 711 117 1 Eukaryota Metamonada   Preaxostyla   Oxymonadida Streblomastigidae Streblomastix Streblomastix strix
26961161 26961161 PRJNA917598_P_NODE_84282_length_248_cov_0.880000_g83338_i0 PRJNA917598 84282 248 0.88 2.1824 Giardia intestinalis 5741 Fornicata other_Eukaryota 55.8 9.56e-7   NR ESU42691.1 5741 g83338 i0 38.8 1.02822580645161 85 38 85.9 3 217 5 214 298 ESU42691.1 Variant-specific surface protein [Giardia intestinalis] diamond 255 55.8 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia duodenalis
29676916 29676916 PRJNA917598_P_NODE_96610_length_235_cov_2.783951_g95666_i0 PRJNA917598 96610 235 2.783951 6.54228485 Giardia intestinalis 5741 Fornicata other_Eukaryota 50.1 8.9e-5   NR XP_001705780.2 5741 g95666 i0 43.9 0.842553191489362 66 35 84.3 1 19 216 378 441 XP_001705780.2 VSP [Giardia intestinalis] diamond 198 50.1 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia duodenalis
30435659 30435659 PRJNA917598_P_NODE_59533_length_292_cov_2.013699_g58589_i0 PRJNA917598 59533 292 2.013699 5.88000108 Giardia muris 5742 Fornicata other_Eukaryota 51.6 3.32e-5   NR TNJ27030.1 5742 g58589 i0 33.7 1.70547945205479 83 54 85.3 1 29 277 136 217 TNJ27030.1 Translation elongation factor 1-beta [Giardia muris] diamond 498 51.6 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia muris

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;