RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA915212" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA915212 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2170565 2170565 PRJNA915212_P_NODE_5462_length_254_cov_0.995122_g5424_i0 PRJNA915212 5462 254 0.995122 2.52760988 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 75 4.92e-9   NTclustered gi|575461033|gb|CP007129.1| 861299 g5424 i0 92.308 13.3700787401575 52 4 20 0 1 52 1037414 1037465 Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence blastn 3396 75 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
26961080 26961080 PRJNA915212_P_NODE_11062_length_172_cov_1.317073_g11024_i0 PRJNA915212 11062 172 1.317073 2.2653655599999998 Longimicrobiales bacterium 2910168 Bacteria Bacteria 72 1.25e-13   NR HWV58520.1 2910168 g11024 i0 57.7 0.906976744186046 52 22 90.7 0 14 169 48 99 HWV58520.1 superoxide dismutase [Longimicrobiales bacterium] diamond 156 72 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium
29771713 29771713 PRJNA915212_P_NODE_13371_length_164_cov_0.886957_g13333_i0 PRJNA915212 13371 164 0.886957 1.45460948 Longimicrobiaceae bacterium 3047548 Bacteria Bacteria 41.6 0.032   NR HEX2190178.1 3047548 g13333 i0 50 0.951219512195122 52 24 91.5 1 152 3 120 171 HEX2190178.1 hydroxyethylthiazole kinase [Longimicrobiaceae bacterium] diamond 156 41.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae   Longimicrobiaceae bacterium
30505926 30505926 PRJNA915212_P_NODE_9993_length_183_cov_1.492537_g9955_i0 PRJNA915212 9993 183 1.492537 2.73134271 Bacteria 2 Bacteria Bacteria 86.3 7.55e-18   NR MFN2384277.1 2026742 g9955 i0 65 4.91803278688525 60 21 98.4 0 3 182 273 332 MFN2384277.1 molecular chaperone DnaK [Gemmatimonadota bacterium] diamond 900 86.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;