RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA915212" and tax_kingdom = "Thermoproteati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermoproteati · 2 ✖

bioproject 1

  • PRJNA915212 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28130161 28130161 PRJNA915212_P_NODE_1645_length_518_cov_1.292111_g1610_i0 PRJNA915212 1645 518 1.292111 6.69313498 Nitrosopumilus sp. 2024843 Archaea Archaea 48.9 0.00395   NR QMU54489.1 2024843 g1610 i0 24.8 1.86486486486486 165 103 92.7 5 484 5 8 156 QMU54489.1 MAG: hypothetical protein GKS07_06085 [Nitrosopumilus sp.] diamond 966 48.9 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosopumilus Nitrosopumilus sp.
31984305 31984305 PRJNA915212_P_NODE_12278_length_166_cov_0.871795_g12240_i0 PRJNA915212 12278 166 0.871795 1.4471797 Conexivisphaera calida 1874277 Archaea Archaea 93.6 1.55e-20   NR WP_269473739.1 1874277 g12240 i0 67.3 0.993975903614458 55 18 99.4 0 165 1 128 182 WP_269473739.1 methionine--tRNA ligase [Conexivisphaera calida] diamond 165 93.6 1 Archaea   Thermoproteati Nitrososphaerota Conexivisphaeria Conexivisphaerales Conexivisphaeraceae Conexivisphaera Conexivisphaera calida

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;