RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA915212", tax_clade = "Metamonada" and tax_phylum = "Parabasalia"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 3 ✖

tax_clade 1

  • Metamonada · 3 ✖

bioproject 1

  • PRJNA915212 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
895094 895094 PRJNA915212_P_NODE_5181_length_262_cov_1.366197_g5143_i0 PRJNA915212 5181 262 1.366197 3.57943614 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 144 1.15e-41   NR XP_067778009.1 135588 g5143 i0 77 11.0725190839695 87 20 99.6 0 261 1 32 118 XP_067778009.1 peptidyl-prolyl cis-trans isomerase [Histomonas meleagridis] diamond 2901 144 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
22572181 22572181 PRJNA915212_P_NODE_11178_length_171_cov_1.254098_g11140_i0 PRJNA915212 11178 171 1.254098 2.14450758 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 52.8 0.014   NTclustered gi|2806470465|ref|XM_068507952.1| 1144522 g11140 i0 96.875 0.187134502923977 32 0 19 1 136 167 474 444 Tritrichomonas foetus uncharacterized protein (TRFO_31469), partial mRNA blastn 32 52.8 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
32743045 32743045 PRJNA915212_P_NODE_12780_length_165_cov_0.879310_g12742_i0 PRJNA915212 12780 165 0.87931 1.4508615 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 62 2.01e-9   NR XP_001322832.1 412133 g12742 i0 64.7 0.927272727272727 51 18 92.7 0 161 9 155 205 XP_001322832.1 enolase family [Trichomonas vaginalis G3] diamond 153 62 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;